| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3404 |
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| Symbol | |
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| ID | 4075578 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | + |
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| Start bp | 423285 |
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| End bp | 424160 |
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| Gene Length | 876 bp |
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| Protein Length | 291 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 638004913 |
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| Product | putative integrase |
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| Protein accession | YP_611638 |
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| Protein GI | 99078380 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.25041 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAACCAAG GCATGGGACC GACAGAAAGC ACGATTTCTG AACACACCCG CAAAGCCTAT
GCGACGGATT GGGCGCATTA CACACGCTGG TGCCGCTTGA ACGGACATCC CACGCTACCA
CCCTCAGTCG CACACATTGA GAACTATCTG ACAGATCTGT CACGTTCGTC TCAACTTGCC
TCGAGCAGTC TCAGGCGGCG GCGCGCCGGG ATCGTGTGGA ACTACAGGCA ACGCGGCTTC
GATCTCGAAA TTCAGTCTAC CCCTCTCCCG GACACGGTGA CCGCGCTGCC GACACATCAA
GTGCAGCGCC CAGCCACAAA AGAGGCGATT ACACCGCAGG AGATGCGAGC GATGCTGGCG
ACTCTCCCCT ATGATCTCCG AGGTCTGCGC GACCGCGCAA TGTTGTTGGT CGGGTATATA
GGTGGCCTGC GGCGGAGCGA AATCATCGGT CTGGACGCAT CTCCAGATCG GAGTGACGAT
AGCATGGGCG GGCTGGAGTT TCGTGACAAT TTCCTACGCG TAACAATCGA AGCCAGAACC
GAGGTGCGAA CCGTAACGCT CCATCGCGGG ACTAGCGCGC AGACTTGCCC AGTACATAGC
GTGCAGCAAT GGCTTCACTT CGCAAAGATC GAGGCTGGCC CGGTTTTTGT CCGAACTTCG
CGCGACGGCA AACGTGCATT GAGCGCACGC CTAAACGATC GCCACATTCC AAGGCTCATC
AAGAGCACTG TGCTCAGATC CGGCATTCGC GCCGACTTGC CGGAGAATGA ACGCCTGGCG
TTGTTCTCCG GCCAATCTCT CAGGGTCGCA TCAGCGAAGC TTGCAACAGC AGACAACCGC
GTTGACCTCA ATTTGACACG AGCATTGGGA TTTTGA
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| Protein sequence | MNQGMGPTES TISEHTRKAY ATDWAHYTRW CRLNGHPTLP PSVAHIENYL TDLSRSSQLA
SSSLRRRRAG IVWNYRQRGF DLEIQSTPLP DTVTALPTHQ VQRPATKEAI TPQEMRAMLA
TLPYDLRGLR DRAMLLVGYI GGLRRSEIIG LDASPDRSDD SMGGLEFRDN FLRVTIEART
EVRTVTLHRG TSAQTCPVHS VQQWLHFAKI EAGPVFVRTS RDGKRALSAR LNDRHIPRLI
KSTVLRSGIR ADLPENERLA LFSGQSLRVA SAKLATADNR VDLNLTRALG F
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