Gene TM1040_3396 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_3396 
Symbol 
ID4075570 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008043 
Strand
Start bp415555 
End bp416649 
Gene Length1095 bp 
Protein Length364 aa 
Translation table11 
GC content59% 
IMG OID638004905 
ProductABC transporter related 
Protein accessionYP_611630 
Protein GI99078372 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3839] ABC-type sugar transport systems, ATPase components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.304213 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.67181 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGAAG TTACTCTGAC AGACGTGATC AAACGCTATG GCCAGCATCA GGCTGTGCAT 
GGCATCAATC TCGATATTCA GGACGGTGAG TTCGTCGTCC TGGTTGGCCC CTCGGGATGC
GGAAAGTCCA CGACCCTGCG CATGATTGCC GGGCTTGAGG ATATCTCTGG TGGAGAGGTC
AAGATCGGTG GACGGGTGGT GAATGATCTC CCCCCGCGCG AGCGCAACAT CTCCATGGTG
TTTCAGAATT ACGCGCTTTA TCCGCACATG ACCGTGCGCG AGAACCTCGG CTTTTCACTG
AAGATTGCCA AGCGCCCTGA GGCTGAGATC GAACGCGCCG TCACAGAAGC CGCGCAAATT
CTCGGCCTGG ACGAGTTGAT GGAGCGCAAA CCTGCCGCGC TTTCTGGGGG GCAACGCCAG
CGGGTTGCCA TGGGGCGCGC GATCGTGCGT CAGCCGGATG TGTTCCTGTT CGACGAGCCG
CTCTCAAACC TTGATGCGAA ACTGCGTACT CAGATGCGGG TCGAGATCAA GAAGCTGCAC
CAGAAAGTCG GGAATACAGT GATCTATGTG ACTCACGATC AGGTCGAAGC AATGACGCTG
GCGGATCGGA TCGTGTTGAT GCGCGATGGT CATATCGTGC AGACTGGCAC ACCGCTCGAC
CTGTTCAATG CGCCAGTTGA TACCTTTGTC GCCACCTTTA TTGGCTCACC GCCGATGAAC
CTCGTTGATG GGATAGTCAC CGAAACCGGT GCGCTCCGAC TTGGTGATCA CATCACGTTG
CCGATGCCGA GCGAAGCCCG CGGTGCTGTG CGGCCAGGTC AGGAAATCAG CTTTGGTTTC
CGGGCCGACA ATCTGATGCC CGACGGCCAC TCGGTCGAGG AAAGCGGGCA GATGGCCCCG
CTGGAACTGG AGGTCGCCCT GACGGAGCCT CTGGGCACGG AAACACTTCT CTTTGCCGAG
TTTGCGGGCC GTGAGGTGCA GGCCAAGATG CTCAACCCGC GTCCCGTGCA GCCGGGCGAA
CGGCTGCCGT TTCATCTGAT GCTCGACAAA TGTCACGTCT TTGACCGCAA AAGCGGCAAG
GCGCTGAGAG GGTAG
 
Protein sequence
MTEVTLTDVI KRYGQHQAVH GINLDIQDGE FVVLVGPSGC GKSTTLRMIA GLEDISGGEV 
KIGGRVVNDL PPRERNISMV FQNYALYPHM TVRENLGFSL KIAKRPEAEI ERAVTEAAQI
LGLDELMERK PAALSGGQRQ RVAMGRAIVR QPDVFLFDEP LSNLDAKLRT QMRVEIKKLH
QKVGNTVIYV THDQVEAMTL ADRIVLMRDG HIVQTGTPLD LFNAPVDTFV ATFIGSPPMN
LVDGIVTETG ALRLGDHITL PMPSEARGAV RPGQEISFGF RADNLMPDGH SVEESGQMAP
LELEVALTEP LGTETLLFAE FAGREVQAKM LNPRPVQPGE RLPFHLMLDK CHVFDRKSGK
ALRG