| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3359 |
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| Symbol | |
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| ID | 4075258 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | - |
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| Start bp | 371096 |
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| End bp | 371686 |
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| Gene Length | 591 bp |
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| Protein Length | 196 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638004867 |
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| Product | tripartite ATP-independent periplasmic transporter DctQ |
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| Protein accession | YP_611593 |
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| Protein GI | 99078335 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3090] TRAP-type C4-dicarboxylate transport system, small permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.437866 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCCAA TCCTGGCTCT ACTGGCTGTA TTACGCCCGC TCAACAGCGG GCTTTTGGCG
GTTGGACGCT GGATCGGGGT GTGCGCCGTT GCCGCAATGG TGATTGCGAT CCTGATTCAG
GTTTTCTTTC GCTATGTGCT TGGAAATGCG CTGCCTTGGC CGGACGAGGC AGCGCGTTTC
TGCATGCTGT GGATGACTGG CCTGATGGCG CCGACCGCGT TTCGGCGCGG TGGGTTTGTC
GCCATTGATG TCTTCGAAGT CCTCTTGCGC GGGGTGGCAG TTCACCTGTT GCAACTGGTG
CTTCTGGGCA TCGCCATGAG CGTGCTGATC CTCGCCTTTC AGATCGGATA CAAAGAAGTT
GGCGGGATTG GCGGCCGCTT CGCCACCGCG TCTCTCTATG TCCCGACATC CTTTGCGTTT
GATGAGTGGT ACCGCGTCCC GCGCAGCTGG ATGATGATGT CGCTTTTGAT CGGGGTCGGA
CTTTTGATCC TCGTGTGCAT CGAGCTCATG CTCGAGCGCG TTGTGCATAT CTTCGGGCAG
GGCGACCTGT TGCCCGCACG CGACAAGTTC ACCATGGGAG GTGCGGAGTA A
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| Protein sequence | MKPILALLAV LRPLNSGLLA VGRWIGVCAV AAMVIAILIQ VFFRYVLGNA LPWPDEAARF
CMLWMTGLMA PTAFRRGGFV AIDVFEVLLR GVAVHLLQLV LLGIAMSVLI LAFQIGYKEV
GGIGGRFATA SLYVPTSFAF DEWYRVPRSW MMMSLLIGVG LLILVCIELM LERVVHIFGQ
GDLLPARDKF TMGGAE
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