| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3358 |
|---|
| Symbol | |
|---|
| ID | 4075257 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008043 |
|---|
| Strand | - |
|---|
| Start bp | 369621 |
|---|
| End bp | 371096 |
|---|
| Gene Length | 1476 bp |
|---|
| Protein Length | 491 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 638004866 |
|---|
| Product | TRAP dicarboxylate transporter- DctM subunit |
|---|
| Protein accession | YP_611592 |
|---|
| Protein GI | 99078334 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
|---|
| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.650904 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.349899 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGATTT GGTTCCTCCC GGTATTTCTG GTCCTTTTGA TGATCGGCCT ACCGGTGTTC
TTCAGCCTAC TGGCGGCCCC CGGCGCGTTG CTGATTTTGA ACGGTCAAGA ACGCGACCTG
ACACTTCTTT ATCGTAACCT TTACAATGGT ATGGACAGCT TCCCGCTGAT GGCGATCCCC
TTCTTCATGT TGGCAGGGGA GTTGATGAAC CGTGGCGGCA TCACGCAGCG ACTGGTGGAG
TTCTCTCAGG CATTGATGGG GCATCTGCGC GGAGGCTTGG CACAGGTGAA CATCCTGTCT
TCGATTCTCT TTGCTGGCCT GTCTGGCTCT GCGGTCGCAG ACACTTCGGC CCTTGGGTCC
ATGCTGATCC CCGCGATGGA AAAAGAAGGC TATTCGCGCC GGTTTGCCGC TGCCATCACT
GCCGCAAGTT CGGTCATCGG CCCGATTATC CCCCCTTCGG GCATCATGAT CATCTACGCC
TATGTTATGG GGGAAAGCGT CGCCGCGCTC TTCCTTGCCG GGATCGTGCC GGGTGTTCTG
GTGGGGGTTG GGCTGATGGT CGCGGTGCGT CTGATGGCCA ATCGGTACCA GTTGCCAGAA
GCAAAACGCG TTGTTTTTGA AAAGGTCGAA ATTGGCCGGA TGGAATCCGT GGTGTCCTTT
CTTCTGGTGC GCCTCAACCT CGGCCTGATC CTGTCGCAGT TCGTACCCAG CGGGGCAGAC
GCCACTGCAA CAACTCATTG GTTGATCTTC CTCGCGAGTC TCCTTGCGGC GCATGGGCTG
ATGCTTGGCC TGAGACGCCA GGTCAGCCAT GAGTTTCGCT TGATCTGCAA ACGGGCTGTT
GTCCCATTGC AGACCCCTGT GCTGATCCTT GGCGGTATCC TAGCGGGTGT GTTCACCCCG
ACAGAGGCCG CAGCCGTAGC GGTTGCTTAT GCGATTTTCA TCGGGTTTGG CGTGCTGCGG
ACCATGACGC TGGCAGATCT GCCGGATGTG CTGACTCGTG CGGGCATCAC CTCTTCGGTT
GTGCTCTTGC TGGTGGGGGC GGCGATGTCG TTCAAAACCG TTGTCAGCCT CAGCCATGCG
CCGGAGCAGC TTGCCTCTTT CATTCTGACC CTGTCCGAGA ACCCGCTGAT CCTGTTGTTC
CTGATCAACC TCTTGCTCTT CATCGTAGGG ATGTTCCTCG ATGCGGGGCC GGCGATCATC
ATTCTTGGCC CCATTCTCGG CCCCGTTTTT GCGGATCTCG GGGTCGAGTC GGTGCATTTT
GCAATCATCA TGTGCGTCAA TCTGACGGTT GGCCTGGCGA CGCCACCGAT GGGGCTCGTG
TTGTTTGTGG CGGCAGCGGT GTCACACGAG AGGGTGACCA CGATCGCGCG GGCGATCCTG
CCTTTCCTGG CGATCGAGAT CGCAGTGATC TTTCTGATCA CTTTCGTGCC CGCGATTTCC
CTTACAGTTC CAAGGCTTAC TGGGTTCTTG AACTAG
|
|---|
| Protein sequence | MLIWFLPVFL VLLMIGLPVF FSLLAAPGAL LILNGQERDL TLLYRNLYNG MDSFPLMAIP
FFMLAGELMN RGGITQRLVE FSQALMGHLR GGLAQVNILS SILFAGLSGS AVADTSALGS
MLIPAMEKEG YSRRFAAAIT AASSVIGPII PPSGIMIIYA YVMGESVAAL FLAGIVPGVL
VGVGLMVAVR LMANRYQLPE AKRVVFEKVE IGRMESVVSF LLVRLNLGLI LSQFVPSGAD
ATATTHWLIF LASLLAAHGL MLGLRRQVSH EFRLICKRAV VPLQTPVLIL GGILAGVFTP
TEAAAVAVAY AIFIGFGVLR TMTLADLPDV LTRAGITSSV VLLLVGAAMS FKTVVSLSHA
PEQLASFILT LSENPLILLF LINLLLFIVG MFLDAGPAII ILGPILGPVF ADLGVESVHF
AIIMCVNLTV GLATPPMGLV LFVAAAVSHE RVTTIARAIL PFLAIEIAVI FLITFVPAIS
LTVPRLTGFL N
|
|---|
| |