| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3343 |
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| Symbol | |
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| ID | 4075242 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | - |
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| Start bp | 354019 |
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| End bp | 354969 |
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| Gene Length | 951 bp |
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| Protein Length | 316 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638004851 |
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| Product | periplasmic binding protein/LacI transcriptional regulator |
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| Protein accession | YP_611577 |
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| Protein GI | 99078319 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000000331055 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.275562 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTTCAT TGACAAAGAA ATTTGCGCTG GCGGCGGTTG TTGCCGCAGC GCCCCTGATG
GTGGCCACGA CGGTCTCAGC CGAAGGGGAG AAATACATCC TGGTCAGCCA CGCGCCTGAC
AGCGACAGCT GGTGGAATAC GATCAAGAAC GGCATCGCAC TGGCCGGCGA GCAGATGGAC
GTCGAAGTGG AATACCGCAA CCCGCCTACG GGCGATTTAG CCGATATGGC GCGGATCATC
GAGCAGGCGG CCGCATCAGG CCCGAATGGG ATTATCACCA CGCTGGCAGA TTATGACGTG
TTGTCCGGTC CCATCAAAAC GGCGGTCGAC AGTGGCGTGG ACGTGATCAT CATGAACACG
GGCACCCCGG ATCAGGCACG CTCTGTCGGG GCTTTGATGT ATGTGGGGCA GCCGGAGTAC
GACGCGGGCT ACGCTGCGGG TCTGCGCGCC AAAGGCGACG GTGTCGAGAG CTTCCTATGT
GTGAACCACT ATATTGTACA ACCTTCCTCG CAGGATCGTT GCCAGGGGTT CGCGGATGGT
CTCGGGGTGG AGCTCGGTAC GCAAATGATT GACGCGGGTC AGGACCCGGC TGAAATCAAG
AACCGTGTGC TGGCCTATCT TTCGGCCAAT CCCGACACCG ACGCTGTTTT GACCCTGGGG
CCGACCAGTG CCGACCCAAC GCTCCTGGCG CTTGAAGAAA ACGGCATGGC GGGTGACATC
TACTTCGGCA CTTTCGATCT GGGCGGCGAA ATCGTCAAAG GCATCCAATC CGGTGTCATC
CAGTGGGGTA TTGACCAGCA GCCTTTCCTC CAGGCTTACC TGCCGGTTGT GGTCATGACG
AATTACCACC GCTATGGCGT CCTGCCCGGC AACAACATCA ACTCTGGTCC CGGCTTTGTA
ACCGCCGATG GTCTCGAGAA GATCGAGCAG TTTGCAGGCG AGTATCGCTG A
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| Protein sequence | MTSLTKKFAL AAVVAAAPLM VATTVSAEGE KYILVSHAPD SDSWWNTIKN GIALAGEQMD
VEVEYRNPPT GDLADMARII EQAAASGPNG IITTLADYDV LSGPIKTAVD SGVDVIIMNT
GTPDQARSVG ALMYVGQPEY DAGYAAGLRA KGDGVESFLC VNHYIVQPSS QDRCQGFADG
LGVELGTQMI DAGQDPAEIK NRVLAYLSAN PDTDAVLTLG PTSADPTLLA LEENGMAGDI
YFGTFDLGGE IVKGIQSGVI QWGIDQQPFL QAYLPVVVMT NYHRYGVLPG NNINSGPGFV
TADGLEKIEQ FAGEYR
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