| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3319 |
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| Symbol | |
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| ID | 4075724 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | - |
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| Start bp | 327591 |
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| End bp | 328571 |
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| Gene Length | 981 bp |
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| Protein Length | 326 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638004827 |
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| Product | TRAP dicarboxylate transporter, DctP subunit |
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| Protein accession | YP_611553 |
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| Protein GI | 99078295 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0205242 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.450742 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGTTT TTTCCCGCAG TCTCCTGGCC GCAGGTGCCA GCTTTGCCTT TGCCGTTCCG
CTGGCCGCAC AGACCGAGAT CAAGATTGGC TATGCACTGG CAGAGGACAG CCATTACGGC
GTGGCTGCCA AGACATTCGA AGAGGTTGTG CTGGAGCAGA CCGGTGAGGA TTTCAGCTTC
ACGCATTTCC CGTCGTCCGG TCTGGGCGGT GAGCGCGATG TGATCGAGGG CCTGCAGCTT
GGCACCGTGG AAGTCACCAT CGTGTCTTCC GGCACGCTGG CCAACTTTGT CCCTGAAACT
GGTGTTTTCG ACATCCCGTT CCTGTTCCGG GATCTTGGCC ACGCCCGCTC GGTGCTCGAC
GGCCCCATCG GTCAGGACAT CCTTGAAAAG TTTGACGCTG TTGGCCTGCA TGCGCTGGCA
TGGGGCGAGC AGGGCTTTCG CCATATCACC AACAACCGTA ATGCAATCAA CACTCCTGCC
GACGTTCAGG GGCTGAAGCT GCGCACAATG GAAAACCCGG TCCACCTCGC GGCGTTCAAC
GCGATGGGCG CCGCGCCGAC ACCGATGGCG TGGCCCGAGG TGATCTCTTC CATGCAGCAA
GGGGTGATCG ACGGACAGGA AAACCCGCTC TCGGTGATCG TTTCGGTGAA ACTGGACGAA
GTGCAGAAAT ACCTGACCCT CTCCGGTCAC GTTTATTCGC CTGCGATGCT CTTGGTGTCC
AAACCCTTCT GGGAAGGTCT GAATGACGAG CAAAAGGCTG CGTTTGAAGC CGCCGCCGCC
GAGGCCGTGG GTGCCATGCG CGGATACGTC GATGGCATCG AAGCCAGCGG TGTTGAAACG
CTCAAGGAAC GCGGCATGGA AGTGAACGCG CTGAGCGCCG ATGAAAAAGC CGCGTTCCAA
GCGTCAATCC AGTCTGCCTA CGAGGGCTAT TACAAGACCT ATGGCGAGGA TCTCGTGAAA
TCGATCGTCG CGGCTGAGTG A
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| Protein sequence | MTVFSRSLLA AGASFAFAVP LAAQTEIKIG YALAEDSHYG VAAKTFEEVV LEQTGEDFSF
THFPSSGLGG ERDVIEGLQL GTVEVTIVSS GTLANFVPET GVFDIPFLFR DLGHARSVLD
GPIGQDILEK FDAVGLHALA WGEQGFRHIT NNRNAINTPA DVQGLKLRTM ENPVHLAAFN
AMGAAPTPMA WPEVISSMQQ GVIDGQENPL SVIVSVKLDE VQKYLTLSGH VYSPAMLLVS
KPFWEGLNDE QKAAFEAAAA EAVGAMRGYV DGIEASGVET LKERGMEVNA LSADEKAAFQ
ASIQSAYEGY YKTYGEDLVK SIVAAE
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