| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3317 |
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| Symbol | |
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| ID | 4075722 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | - |
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| Start bp | 325731 |
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| End bp | 327014 |
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| Gene Length | 1284 bp |
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| Protein Length | 427 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638004825 |
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| Product | TRAP dicarboxylate transporter- DctM subunit |
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| Protein accession | YP_611551 |
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| Protein GI | 99078293 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.00194447 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.490957 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCTGAGA TCCTTTTCCC TGCACTTTTT GTCTTGCTGG CGCTTGGACT GCCGGTGGCC
TTTGCAATGA TGATCGCTGT TTTTCTGGCA CTGAGCCTTG GGTCGTCTTA CCCGCACCTC
GTTGTGGTCA AAGAGATGTT CTCTGGCCTT GACAGTTTTC CGCTCTTGGC GGTGCCTTTC
TTTATCCTCG CGGCAGAGAT CATGACGGGC GGGGCCGTCA CCATGGCGCT GTTGCGATTG
GCGCAGTCCT TCGTCGGGCA TCTGAGAGGT GGGTTAGGGC ACGCCAATGT GGTCAGCTCC
GCCATGTTTG CAGGCATTTC CGGGAGCGCC TTGGCCGATG CGGCTGGACC CGGCTCGATG
ATGATCCGGA TGATGGAAAA AGGCGGGTAT GATCGCTCGT ATGCCGGGGC GCTCACGATT
GCCAGCGCGG TAGTCGGGCC CATCATCCCG CCTTCGATCA CCATGATCAT CTACGCCATG
CAGGATCAGA ATGTCTCTGT TGGGTCCTTG TTCATGGCGG GGGTGTTGCC GGGCGTCTTG
ATCACCTGCA TGGTGCTTGT CGCCAACGCT TATGTGAGCC GCAAGCGTGG CTACATGAGC
GGTGATGTCA TGCCGACCCT CCTCGAGATC GGGCGGATTT TTGTCTATGC GCTTCCTGCG
CTTTCGCTGA TCGTCCTGAT CGTCGGAGGC ATCAGGTTTG GGGCCTTCAC GCCCACAGAA
GCCTCGGTCA TCGCGGTATT TTATGCGCTG ATTGTGGGGA TGTTTGTCTA TCGTTCGCTG
CGGATTCGTG ACCTGCCGAA CATCTCGCTC AAGGCCGCAA TGACCTCCGG GGCGGTTCTG
TTGATCCTGG GGGCGGCGCG GGCCTTTGCC TGGGTCCTGA TCATCGAGGG CATCCCGCAG
CAACTCGCCG AAACGATCAT CAGCTGGGAG CTGTCGCCAG TGGCGTTTCT GTTGGCTGTG
AACCTGCTGC TGCTGGCCTT CGGGCTCTTC ATGGATCCGT TGCCGGGCGT CATGATCCTT
GTCCCGATCT TGGCCCCGAT CAGCTTTGCG CTTGGGATCG ACCCAAACCA TTTTGCCATC
ATCGTGATCG TGAACCTGAC GATGGGGCTG ACCACGCCCC CGGTCGGGAG CCTGATCTTT
GTAGTGTCCT CAACGGTGCA TCTGAAGCCG TCCGCTCTGA TCCGCGAATT GCCGCCTTTC
TTTCTGGCCT TGGCCGCGGC GCTTTTGCTG ATCACATTTG TACCAAACCT GTCTACCTGG
CTTCCTGAGG TCAGCGGATT CTGA
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| Protein sequence | MAEILFPALF VLLALGLPVA FAMMIAVFLA LSLGSSYPHL VVVKEMFSGL DSFPLLAVPF
FILAAEIMTG GAVTMALLRL AQSFVGHLRG GLGHANVVSS AMFAGISGSA LADAAGPGSM
MIRMMEKGGY DRSYAGALTI ASAVVGPIIP PSITMIIYAM QDQNVSVGSL FMAGVLPGVL
ITCMVLVANA YVSRKRGYMS GDVMPTLLEI GRIFVYALPA LSLIVLIVGG IRFGAFTPTE
ASVIAVFYAL IVGMFVYRSL RIRDLPNISL KAAMTSGAVL LILGAARAFA WVLIIEGIPQ
QLAETIISWE LSPVAFLLAV NLLLLAFGLF MDPLPGVMIL VPILAPISFA LGIDPNHFAI
IVIVNLTMGL TTPPVGSLIF VVSSTVHLKP SALIRELPPF FLALAAALLL ITFVPNLSTW
LPEVSGF
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