Gene TM1040_3308 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_3308 
Symbol 
ID4075712 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008043 
Strand
Start bp316810 
End bp317850 
Gene Length1041 bp 
Protein Length346 aa 
Translation table11 
GC content60% 
IMG OID638004816 
ProductLacI family transcription regulator 
Protein accessionYP_611542 
Protein GI99078284 
COG category[K] Transcription 
COG ID[COG1609] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.608255 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.781204 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACCTCA AAGAACTTTC GGCAGTCCTT GGTCTGTCAC AAACCACCGT GAGCCGAGCG 
CTAAACGGCT ATCCCGAAGT CAGCGAGGCT ACGCGCAAGC GCGTGATGCA GGCCGCCCAA
GATCACAATT ATCGCCCCAA CACCCGTGCC AAGGCATTGG CGACGGGGCG CGCGATGGCA
ATCGGTCATG TGATTCCGCT CTCGACCCAG CACGAGATGA TGAACCCGAT TTTCAGCGAC
TTCATTGCGG GCGCCGGAGA GAGCTACAGC CAAGCAGGCT ACGACATGGT GCTCTCACTG
GTCGCCGACG AAGATCAGTC CCGCGCCTAT CACGAAATGG CCGCCAAGCG GAACGTGGAT
GGCATCGTGT TGCACGCACC AAAGATGCGC GACTCTCGGA TTACGATGCT GCAAGAGATC
GGCCTGCCCT TTGCAGTGCA TGGGCGCGCC ACCGATATTT CCAGACCTTA CAGCTGGCTC
GACGTGAACA ATACCAGCGC GTTTCGGCGC GCAACCGACT TTCTGCTGGA TCTGGGCCAC
CGCCGGATCT GCCTTGTGAA CGGTCAAGAG AGCATGGATT TCGCGCACCG CCGCCGCCAG
GGCTATGAGG CGGCGCTGCA GGCACGCGGA ATCCCAGTTG ATCCCGCCCT GATGACGGCA
GGAGAGATGA CCGAAGTCTA TGGCTACGAC ACCGTGCAAC GCACGCAGGC ACTGGAAGAT
CCGCCCACCG CCTATCTGGT GTCCTCGATC ATCGCCGCCT TTGGTGTGCG CCGCGCAATC
GAAGAATCCG GGCTCAAAAT GGGGCGCGAC ATTTCGGTTA TCACCCATGA CGACGACCTG
TCTTATCTGC GAAACGGGGC CGATGTGCCG GTCTTTACCG CCACTCGTTC CTCGGTGCGC
GATGCCGGGC GCAGGTTGGC CAAACTCCTG ATTTCACAGA TCGAAGACCC GGGCGATGCG
CCCTTGACTG AGCTTTTGGA AGCCGAACTC ACTGTCGGTC GCTCAACAGG CCCCGCCCCC
AACAGGACAT CAAAGACATG A
 
Protein sequence
MNLKELSAVL GLSQTTVSRA LNGYPEVSEA TRKRVMQAAQ DHNYRPNTRA KALATGRAMA 
IGHVIPLSTQ HEMMNPIFSD FIAGAGESYS QAGYDMVLSL VADEDQSRAY HEMAAKRNVD
GIVLHAPKMR DSRITMLQEI GLPFAVHGRA TDISRPYSWL DVNNTSAFRR ATDFLLDLGH
RRICLVNGQE SMDFAHRRRQ GYEAALQARG IPVDPALMTA GEMTEVYGYD TVQRTQALED
PPTAYLVSSI IAAFGVRRAI EESGLKMGRD ISVITHDDDL SYLRNGADVP VFTATRSSVR
DAGRRLAKLL ISQIEDPGDA PLTELLEAEL TVGRSTGPAP NRTSKT