Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_3299 |
Symbol | |
ID | 4075702 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008043 |
Strand | + |
Start bp | 304724 |
End bp | 306997 |
Gene Length | 2274 bp |
Protein Length | 757 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 638004806 |
Product | multi-sensor signal transduction histidine kinase |
Protein accession | YP_611533 |
Protein GI | 99078275 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGCCAA AACGATTGCC GATCAAACTC AAGGTCGCCC TGGTCATCTT CATCGTTTCA GGGGCGGCTT TCAGCGCCTT CTTCTTTCTA AACTACCGTG ACACCGTCTC CCGGATCCAC ACTCACACAG AGCAACTGCT GGAGAGGGAT CACAAAACGC ATGCGAGATA CATCCAGGAC ACTCTGACCA CGATGCGTCA GGACGCCGAA ACCCTTATCG GGTTCCCCCC CATTTCTGGG ATTCTGCGCA CGCGCCAATC CGATGAACTC ACCGATCCCT TGGACGGGTC GTCCCTGCAG GATTGGCTTG TGCGTCTAGA GACATTGTTC AAAAGCGTGC TGACCAATCG GAGCGGCTAT AGCCAGATCC GGCTTCTTTT GCCGGAGAAC AATTGGTCCG AAATCGTTCG GGTGAACTTT GTTGCGGGTG AGGTCAGTCA TGTTGACCCC ACGGATTTGC AGCAGAAAGG TGATGAGCCC TACATCAGGC TGCTGCAAGC TGTTGAAACC GATGACTCGC TATTTTCAAA CGTGACGCGC AACCGAGAAA AAGGGAGTGT CGTCGGCCCC CCGACACTGC GCTCCATCAA GAGATTGGTG AATGACGACG GGGCCGTGAT CGGCGCGGTG GTCATCAACG CGGTTCTTTC CGAACTTCTG TCCGTGCCGG AATACGAAGG AGAGCTGGGG CGGACCTACT ACGTTATCCA AAACCATGTC GAACCCGCCT TCCCGCTTGC GACCGACGAT CAGAGCTTTG TGCTCTCTCC CGAAGAAACC CCACGGGTTC TCGACTTCAA GGTGGTTGCG CAACAATCTG TAGGTCAGCT GATCGATCTG GGCAGTGATG AAAACCTCTA CCTCAGCTCC GTCCCTATTT CCGACGCCCA TGTGCCATTC GATTTCTTCA TCGCCACCGA CATTGATGCC GGGGCTCTCT TTCAACAGGC TCGGCACGAA CTCTGGAGAA ACTTCGCCCA TGCCCTTGTG CTGACCCTTC TTGCCTCGGG GCTTGGATAT GTCTTTGCAG CACGATTGCT GTCACCGCTC GAACACCTCA TCGACGAGAT CAAGAAAAGC GCGGGCCTGC GCGGCGATCA GGCCGGCTCC CTGTCGAAGG GCGGCGACGA AGTCACACTC ATTGCCAATA ACTTCAAACA GTTGACCAGC GATCTGGTGC GTGAAACACA GCGTTTGGAT ATGGTCCTGA CCAATGTGGC CGAAGGCATC GTGACCCTGT TGCCAGACGG CACCATCGAA GACGCAAATC CTGCCTCCTG CAGGATCTTG GATGAAGACA GCGTGCATCT CACCGGGCGA AATCTCTTTG AAATGCTGGG TTTTGATGAG GAGCACGGAA AGGAAATCCT CTGCGAAACC ATTTCCGCTC GCGGGGATCA GCCTCCACAA CAGCGCGAAA TCTCTCTCAA GAAACAAGCG GGCGAACCCA TCGTCATCAA TCTCGTGATG CGGCATACGT CCTATGCTGA GGGAAGCCGC TTTGTGGCCC TTATCCGCGA TGTGACGGAG CGCGCGGCGG CAACCGCTAG GTCCGAAGCG CTGATTGCCG CCCTCAGGCG CTCCAATGCC GAACTCGATC AATTTGCCTA TATAGCGTCT CACGATCTCA AGGCGCCATT GCGGGTGATC GAGAATGCCG TTTCCTGGCT CGAAGAAGAT CTGCGCCCCC ATCTGACCGA CGACACTCGA GAGAGCATGG ATCTGCTGCG TAACCGTGCC CGCCGCATGG AAGCCCTGCT CAGTGATCTG CTGAAACACT CGCGGATCGG GCGGGTTGCG GATTCGGTTG AAAAGGTGAC AGGGGTCCAA TTGTCAGAGA GCATCCTGGA ACTCCTCGAC GTCCCTGAAA ATATCCGGAT CGTGTTTTCG GACGACTTCT ACCATTTGAC TGTCCAGAAA ATGCCCCTGG AAACGGTCCT CGTGAATCTG ATCGGCAACA GTATTAAGCA CCACGATCGA GGTTCGGGCT ATGTATCGAT CGATGTCAAA CATAGCGACG GATTCATGCG CTTTCGCGTC GAAGATGATG GCCCCGGGAT CGAACCCGCC TATCACGACC GGATTTTCGA CATCTTCAGA ACATTGCGCT CTCGCGACCA GCTAGAAAGC AGCGGAATGG GATTGGCGAT TGTGAAGAAA CATATCGAAG TGGTTGGAGG CAAAATCGAT GTTCTCTCCG ACGGCGAGCG TGGAACAGTG TTTGAATTCT CTTGGCCAGA CGAAATCGTT CAGGAGGAGG ACAAAGCAGC ATGA
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Protein sequence | MSPKRLPIKL KVALVIFIVS GAAFSAFFFL NYRDTVSRIH THTEQLLERD HKTHARYIQD TLTTMRQDAE TLIGFPPISG ILRTRQSDEL TDPLDGSSLQ DWLVRLETLF KSVLTNRSGY SQIRLLLPEN NWSEIVRVNF VAGEVSHVDP TDLQQKGDEP YIRLLQAVET DDSLFSNVTR NREKGSVVGP PTLRSIKRLV NDDGAVIGAV VINAVLSELL SVPEYEGELG RTYYVIQNHV EPAFPLATDD QSFVLSPEET PRVLDFKVVA QQSVGQLIDL GSDENLYLSS VPISDAHVPF DFFIATDIDA GALFQQARHE LWRNFAHALV LTLLASGLGY VFAARLLSPL EHLIDEIKKS AGLRGDQAGS LSKGGDEVTL IANNFKQLTS DLVRETQRLD MVLTNVAEGI VTLLPDGTIE DANPASCRIL DEDSVHLTGR NLFEMLGFDE EHGKEILCET ISARGDQPPQ QREISLKKQA GEPIVINLVM RHTSYAEGSR FVALIRDVTE RAAATARSEA LIAALRRSNA ELDQFAYIAS HDLKAPLRVI ENAVSWLEED LRPHLTDDTR ESMDLLRNRA RRMEALLSDL LKHSRIGRVA DSVEKVTGVQ LSESILELLD VPENIRIVFS DDFYHLTVQK MPLETVLVNL IGNSIKHHDR GSGYVSIDVK HSDGFMRFRV EDDGPGIEPA YHDRIFDIFR TLRSRDQLES SGMGLAIVKK HIEVVGGKID VLSDGERGTV FEFSWPDEIV QEEDKAA
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