| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3299 |
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| Symbol | |
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| ID | 4075702 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | + |
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| Start bp | 304724 |
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| End bp | 306997 |
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| Gene Length | 2274 bp |
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| Protein Length | 757 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 638004806 |
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| Product | multi-sensor signal transduction histidine kinase |
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| Protein accession | YP_611533 |
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| Protein GI | 99078275 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGCCAA AACGATTGCC GATCAAACTC AAGGTCGCCC TGGTCATCTT CATCGTTTCA
GGGGCGGCTT TCAGCGCCTT CTTCTTTCTA AACTACCGTG ACACCGTCTC CCGGATCCAC
ACTCACACAG AGCAACTGCT GGAGAGGGAT CACAAAACGC ATGCGAGATA CATCCAGGAC
ACTCTGACCA CGATGCGTCA GGACGCCGAA ACCCTTATCG GGTTCCCCCC CATTTCTGGG
ATTCTGCGCA CGCGCCAATC CGATGAACTC ACCGATCCCT TGGACGGGTC GTCCCTGCAG
GATTGGCTTG TGCGTCTAGA GACATTGTTC AAAAGCGTGC TGACCAATCG GAGCGGCTAT
AGCCAGATCC GGCTTCTTTT GCCGGAGAAC AATTGGTCCG AAATCGTTCG GGTGAACTTT
GTTGCGGGTG AGGTCAGTCA TGTTGACCCC ACGGATTTGC AGCAGAAAGG TGATGAGCCC
TACATCAGGC TGCTGCAAGC TGTTGAAACC GATGACTCGC TATTTTCAAA CGTGACGCGC
AACCGAGAAA AAGGGAGTGT CGTCGGCCCC CCGACACTGC GCTCCATCAA GAGATTGGTG
AATGACGACG GGGCCGTGAT CGGCGCGGTG GTCATCAACG CGGTTCTTTC CGAACTTCTG
TCCGTGCCGG AATACGAAGG AGAGCTGGGG CGGACCTACT ACGTTATCCA AAACCATGTC
GAACCCGCCT TCCCGCTTGC GACCGACGAT CAGAGCTTTG TGCTCTCTCC CGAAGAAACC
CCACGGGTTC TCGACTTCAA GGTGGTTGCG CAACAATCTG TAGGTCAGCT GATCGATCTG
GGCAGTGATG AAAACCTCTA CCTCAGCTCC GTCCCTATTT CCGACGCCCA TGTGCCATTC
GATTTCTTCA TCGCCACCGA CATTGATGCC GGGGCTCTCT TTCAACAGGC TCGGCACGAA
CTCTGGAGAA ACTTCGCCCA TGCCCTTGTG CTGACCCTTC TTGCCTCGGG GCTTGGATAT
GTCTTTGCAG CACGATTGCT GTCACCGCTC GAACACCTCA TCGACGAGAT CAAGAAAAGC
GCGGGCCTGC GCGGCGATCA GGCCGGCTCC CTGTCGAAGG GCGGCGACGA AGTCACACTC
ATTGCCAATA ACTTCAAACA GTTGACCAGC GATCTGGTGC GTGAAACACA GCGTTTGGAT
ATGGTCCTGA CCAATGTGGC CGAAGGCATC GTGACCCTGT TGCCAGACGG CACCATCGAA
GACGCAAATC CTGCCTCCTG CAGGATCTTG GATGAAGACA GCGTGCATCT CACCGGGCGA
AATCTCTTTG AAATGCTGGG TTTTGATGAG GAGCACGGAA AGGAAATCCT CTGCGAAACC
ATTTCCGCTC GCGGGGATCA GCCTCCACAA CAGCGCGAAA TCTCTCTCAA GAAACAAGCG
GGCGAACCCA TCGTCATCAA TCTCGTGATG CGGCATACGT CCTATGCTGA GGGAAGCCGC
TTTGTGGCCC TTATCCGCGA TGTGACGGAG CGCGCGGCGG CAACCGCTAG GTCCGAAGCG
CTGATTGCCG CCCTCAGGCG CTCCAATGCC GAACTCGATC AATTTGCCTA TATAGCGTCT
CACGATCTCA AGGCGCCATT GCGGGTGATC GAGAATGCCG TTTCCTGGCT CGAAGAAGAT
CTGCGCCCCC ATCTGACCGA CGACACTCGA GAGAGCATGG ATCTGCTGCG TAACCGTGCC
CGCCGCATGG AAGCCCTGCT CAGTGATCTG CTGAAACACT CGCGGATCGG GCGGGTTGCG
GATTCGGTTG AAAAGGTGAC AGGGGTCCAA TTGTCAGAGA GCATCCTGGA ACTCCTCGAC
GTCCCTGAAA ATATCCGGAT CGTGTTTTCG GACGACTTCT ACCATTTGAC TGTCCAGAAA
ATGCCCCTGG AAACGGTCCT CGTGAATCTG ATCGGCAACA GTATTAAGCA CCACGATCGA
GGTTCGGGCT ATGTATCGAT CGATGTCAAA CATAGCGACG GATTCATGCG CTTTCGCGTC
GAAGATGATG GCCCCGGGAT CGAACCCGCC TATCACGACC GGATTTTCGA CATCTTCAGA
ACATTGCGCT CTCGCGACCA GCTAGAAAGC AGCGGAATGG GATTGGCGAT TGTGAAGAAA
CATATCGAAG TGGTTGGAGG CAAAATCGAT GTTCTCTCCG ACGGCGAGCG TGGAACAGTG
TTTGAATTCT CTTGGCCAGA CGAAATCGTT CAGGAGGAGG ACAAAGCAGC ATGA
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| Protein sequence | MSPKRLPIKL KVALVIFIVS GAAFSAFFFL NYRDTVSRIH THTEQLLERD HKTHARYIQD
TLTTMRQDAE TLIGFPPISG ILRTRQSDEL TDPLDGSSLQ DWLVRLETLF KSVLTNRSGY
SQIRLLLPEN NWSEIVRVNF VAGEVSHVDP TDLQQKGDEP YIRLLQAVET DDSLFSNVTR
NREKGSVVGP PTLRSIKRLV NDDGAVIGAV VINAVLSELL SVPEYEGELG RTYYVIQNHV
EPAFPLATDD QSFVLSPEET PRVLDFKVVA QQSVGQLIDL GSDENLYLSS VPISDAHVPF
DFFIATDIDA GALFQQARHE LWRNFAHALV LTLLASGLGY VFAARLLSPL EHLIDEIKKS
AGLRGDQAGS LSKGGDEVTL IANNFKQLTS DLVRETQRLD MVLTNVAEGI VTLLPDGTIE
DANPASCRIL DEDSVHLTGR NLFEMLGFDE EHGKEILCET ISARGDQPPQ QREISLKKQA
GEPIVINLVM RHTSYAEGSR FVALIRDVTE RAAATARSEA LIAALRRSNA ELDQFAYIAS
HDLKAPLRVI ENAVSWLEED LRPHLTDDTR ESMDLLRNRA RRMEALLSDL LKHSRIGRVA
DSVEKVTGVQ LSESILELLD VPENIRIVFS DDFYHLTVQK MPLETVLVNL IGNSIKHHDR
GSGYVSIDVK HSDGFMRFRV EDDGPGIEPA YHDRIFDIFR TLRSRDQLES SGMGLAIVKK
HIEVVGGKID VLSDGERGTV FEFSWPDEIV QEEDKAA
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