| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3270 |
|---|
| Symbol | |
|---|
| ID | 4075412 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008043 |
|---|
| Strand | - |
|---|
| Start bp | 272076 |
|---|
| End bp | 272879 |
|---|
| Gene Length | 804 bp |
|---|
| Protein Length | 267 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 638004779 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_611506 |
|---|
| Protein GI | 99078248 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | [TIGR01963] 3-hydroxybutyrate dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.97401 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGATC TTCGGGGAAA AACGGCGCTG GTCACGGGGT CGGTGCAAGG GATCGGGCTG
GCCATTGCCG AGGCGTTGGC CGGGGCTGGC GCGCGCATTG CTGTGCATGG CCTCGCGGAT
GCGGCTCAGG CACAGGCTGC CGTTGATGCC CTGCGCGCTG CCGGTGCGCC TGAGGCGCGC
TTTTTTGACG CCGACATGCG CGATGTCGCG GCTATTGAGG CGATGATGGA TGATATCAAC
GCCTGGGGCG GTCTTGACAT TCTTGTCAAT AATGCTGGCA TCCAGAAAAC CGCGCGGCTT
GCTGACCTCG ACACCGAGAC GTGGGACGCG ATCATCGGAG TGAACCTTTC GGGTGCGTTT
CACACCATGC GGCTTGCTTT GCCGAAGATG GCTGAGAAAG GCTATGGCCG GGTCATCAAT
ATCGCCAGCG TTCACGGCAT CGTCGCCTCG GTCGCCAAAG TGCCCTATTG CGCCTCGAAG
TTTGGGCTGG TGGGCATGTC GAAAGTGGCT GCGCTGGAAT ACGCGGCGGC GGGCTCCAAG
CGCGAAGGCG GCATCACCGT CAACTGCATC GGGCCTGGCT GGACAGAAAC TGCAATCATC
AAGCCGCAGG TCGAGGCGCG CGCAGCGCAG TTTGATGGCG ACCGCGACAA GGGGATTGCT
GATCTGCTGG CGGAAAAACA ACCCAGTCGG CGCACCTCTG ATCCTTCGGA GATCGGTGCG
CTTGCGTTGT GGCTCTGTGC GCCAGTCGCC CACAATGTTA CCGGCACGGT GATCCCGGTC
GATGGCGGCT GGACGGCGCA ATAG
|
|---|
| Protein sequence | MTDLRGKTAL VTGSVQGIGL AIAEALAGAG ARIAVHGLAD AAQAQAAVDA LRAAGAPEAR
FFDADMRDVA AIEAMMDDIN AWGGLDILVN NAGIQKTARL ADLDTETWDA IIGVNLSGAF
HTMRLALPKM AEKGYGRVIN IASVHGIVAS VAKVPYCASK FGLVGMSKVA ALEYAAAGSK
REGGITVNCI GPGWTETAII KPQVEARAAQ FDGDRDKGIA DLLAEKQPSR RTSDPSEIGA
LALWLCAPVA HNVTGTVIPV DGGWTAQ
|
|---|
| |