| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3266 |
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| Symbol | |
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| ID | 4075408 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | + |
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| Start bp | 267890 |
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| End bp | 268942 |
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| Gene Length | 1053 bp |
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| Protein Length | 350 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 638004775 |
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| Product | periplasmic binding protein/LacI transcriptional regulator |
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| Protein accession | YP_611502 |
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| Protein GI | 99078244 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.700035 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.539349 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACACT ATCTCAGCAC CGTGGCGCTT GGCGCCGCCC TGGCCCTGGC CACGTCATCG
GCCTTTGCCC AGACGGTTGG CCCCAAGGGC GAGGCCGCGA CACCAACGGC ATCGATCATG
GTCGAAGACG GAGACCTCGA GACGATCCGC AGCGGCAATC ACACCGCCGC GCTCCTTTGG
CATGACCAAA GCGATTTTGT AAATGCTGTG ACGGCAGGCG CGACCGATGA GCTGGCGCGC
GCCGGGATCG AAGTCGTCGC CACCGCAAGC GCCGGGTTCG ACGCCGCCAA ACAGCGAAGC
GATATCGAAA CCGCCCTGAG CAAAGACCCG AGCATCATCC TGTCACTCCC CCTCGATCCG
GTAACCTCTG CCGCCGCGTT TGAGGAAGCC AAGGAAAACG GCGTGAAGCT GGTGTTCCTG
TCCAACGTGC CCTCTGACTA TGAACACGCA AAGGATTACG CGGCGATTGT CACCGACGAT
CTGTTCCAGA TGGGCAAGCA GGCTGCAGAC GCGCTGGCCG CATCCATGGG CGGGGCGGGC
ACCGTGGGCT GGATCTACCA TGACGCCGAC TATTATGTGA CCAACCAGCG CGATAACGCC
TTCAAGACCA CCATTGAAAA CGACTACCCG GAAATTTCAA TCGTAGCAGA GCAAGGCATC
AGCGACCCTG CCCGCGCTGA GGACATTGCC AACGCGATGT TGCTGCGCAA CCCTGACATC
GGGGGCATCT ACGTGACCTG GGCTGGTCCC GCCGAGGGCG TTCTGGCCGC ACTTCGGGCA
AATGGCAATG ACACCACCAA AGTGGTGACG CTTGATCTCT CGGAGCCGGT GGCGCTCGAT
ATGGTTCGGG GCGGCAATGT TGCAGCCATC GTTGCCGACG AAGCCTATGA GCTAGGCCGC
GCCATGGCCG CAGCTGCGAT CCTTGATCTT TTGGGCAAGG ACGTCCCTCC ATTCGTGGTG
GCCCCCGCAG TGACCGTCAC CGCTGAGAAT GTGGCCGAAG GCTGGATGCG ATCCCTGCAC
ATCGACGCCC CAAAGAGCGT CACTGGCAAC TGA
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| Protein sequence | MKHYLSTVAL GAALALATSS AFAQTVGPKG EAATPTASIM VEDGDLETIR SGNHTAALLW
HDQSDFVNAV TAGATDELAR AGIEVVATAS AGFDAAKQRS DIETALSKDP SIILSLPLDP
VTSAAAFEEA KENGVKLVFL SNVPSDYEHA KDYAAIVTDD LFQMGKQAAD ALAASMGGAG
TVGWIYHDAD YYVTNQRDNA FKTTIENDYP EISIVAEQGI SDPARAEDIA NAMLLRNPDI
GGIYVTWAGP AEGVLAALRA NGNDTTKVVT LDLSEPVALD MVRGGNVAAI VADEAYELGR
AMAAAAILDL LGKDVPPFVV APAVTVTAEN VAEGWMRSLH IDAPKSVTGN
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