| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3264 |
|---|
| Symbol | |
|---|
| ID | 4075406 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008043 |
|---|
| Strand | + |
|---|
| Start bp | 265413 |
|---|
| End bp | 266627 |
|---|
| Gene Length | 1215 bp |
|---|
| Protein Length | 404 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 638004773 |
|---|
| Product | ROK domain-containing protein |
|---|
| Protein accession | YP_611500 |
|---|
| Protein GI | 99078242 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1940] Transcriptional regulator/sugar kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.228362 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCCGACC CCTTGAACCT CTCGCGCCGG ATGACCCTTA GCAACATCGT GCAGGCGATC
ACGACCTATG GTCCAGTTTC GCGCGCAAGC GTTGCGAAGA TGACAGGGTA CTCCAAACAG
ACCGTGTCCG AGGTTGTCTC CTCGCTGGAG GACGACGGCT GGGTTCAGAC CGTCGGACGC
ACCGAGGGCA ACGTCGGACG GCGCGCGGTT GTCTATGAAA TCGTGCCCAA TGCCGCTTTG
GTCGCCAGCG TTGATCTCGG CGGAACCAAA GTGCGCGTGG CACTGTGCAA TCTCTCTGGC
GCCGTGGTCG AAGAGCTCGC CGAACCCACC TGTCAGGATG GCGGCGAAGC AGTGGTGGAC
CAGATCGCCC GCATCGTTGG ATTGGCGGCC CGCGCCCATG GTATCGCGCA GGAGAAGGTC
CGGGTCGTCG TGGTCGGCGT GCCCGGCGCG CCTGACGCCG AAACCGGCAG CATTCAGATG
GCACCCAATA TCGCGGGCAT TGACGAGATC GACTTCCCCA CCCTGCTGAA CCAGCGTCTC
GGGATCGAAG TGCTGGTGGA AAATGACGTG AACCTTGCCG CCCTTGGCGA ACACTGGATG
ACTCATCAGG GTGAAACGGA TGATCTGGTC TACCTGTCGA TCGGCACCGG TATCGGTGCA
GGTGTGGTGA TCGGCGGACA GTTGGTGCGT GGTGCACGCG GCGCCGCAGG CGAAGTCGGC
TTTATCCCCT TTGGGGCAGA TCCCACAGAA CCCGAAAGCC GCCAGATTGG AGCCTTGGAG
CGCATGGCGG CCACCTCTGC CATCGTGAAC GGCTATTTGG CAGAAACCGG CGCGCAGAAA
ACTGTGCCCG AGATTTTTGA AGCCCATCTG GCGGGCGAGG CGGCGGCAAG CCGTGTGCTG
CAAACCACCG CCGCCTATAT TGCGCGCGCA ATCGGCACGA TTGCCGCCGT GATAGATCCG
AAGTGCATCG TCATTGGCGG CTCGATCGGC GCGCGTCCCG AGTTGATCCA GATGATCGAA
CGCGAGATTG CCCGGAGCTT TCCACGAGAC ATACCGATTG AAACCTCGGT TCTGGGCAAT
CATGCAGCTC TGGCCGGGGG GGCTTCGGTT GCCTTGTCTC GGCTTCACAT CGCGCTGTTC
TCAAGCGGGC TCCCGAATGC AAACATCGTC ATCCCGCCGC CGGAAATCAG CGCCTTTCGC
GAGGGTGTGG CATGA
|
|---|
| Protein sequence | MADPLNLSRR MTLSNIVQAI TTYGPVSRAS VAKMTGYSKQ TVSEVVSSLE DDGWVQTVGR
TEGNVGRRAV VYEIVPNAAL VASVDLGGTK VRVALCNLSG AVVEELAEPT CQDGGEAVVD
QIARIVGLAA RAHGIAQEKV RVVVVGVPGA PDAETGSIQM APNIAGIDEI DFPTLLNQRL
GIEVLVENDV NLAALGEHWM THQGETDDLV YLSIGTGIGA GVVIGGQLVR GARGAAGEVG
FIPFGADPTE PESRQIGALE RMAATSAIVN GYLAETGAQK TVPEIFEAHL AGEAAASRVL
QTTAAYIARA IGTIAAVIDP KCIVIGGSIG ARPELIQMIE REIARSFPRD IPIETSVLGN
HAALAGGASV ALSRLHIALF SSGLPNANIV IPPPEISAFR EGVA
|
|---|
| |