Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_3261 |
Symbol | |
ID | 4075403 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008043 |
Strand | - |
Start bp | 261790 |
End bp | 262362 |
Gene Length | 573 bp |
Protein Length | 190 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 638004770 |
Product | XRE family transcriptional regulator |
Protein accession | YP_611497 |
Protein GI | 99078239 |
COG category | [K] Transcription |
COG ID | [COG1396] Predicted transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.957848 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.179215 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAACATAT CTAACGCTCA GGGCGCAGAC GAGGACCTCG GCCCGCGTCT GCGCAGCGTG CGGGAAAAGG CCAACCTGTC ACAACGTGCG TTGGCCAAGA AAACCGGCGT GCCGAACTCG ACGATCTCAT TGATCGAGTC GGGCAAGATG AACCCTTCGG TGGGCGCGCT CCGGCGTATT CTCGACGGGA TTCCGATCAG CCTTTCGGAC TTTTTTGCCT TTGAGCCCGA GACCGAGAAA GCCAGCTTTT ATGCAGCCGA AGACCTCACC GAAATCGGCA AGGGCAAGGT CTCACTCAAG CAGGTGGGCG CCAATCTTTT TGGGCGCCAG ATGATGATCC TCTACGAGAC CTACGAGATC GGCGCGGATA CCGGGCGGGT GATGTATGGC CATGAGGGCG AAGAGGGGGG CATCGTGCTT TCAGGGAGGA TTGAGATCAC GGTGGGTGCG CAGCGCAAAA TCCTTGGCCC CGGCGACGCC TATTATTTCG ACAGCCGCGC GCCTCATCGG TTTCGCCAGG TCGGGCCTGA AAAATGCGTG CTGGTCAGCG CCTGTACGCC ACCGACGTTT TAA
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Protein sequence | MNISNAQGAD EDLGPRLRSV REKANLSQRA LAKKTGVPNS TISLIESGKM NPSVGALRRI LDGIPISLSD FFAFEPETEK ASFYAAEDLT EIGKGKVSLK QVGANLFGRQ MMILYETYEI GADTGRVMYG HEGEEGGIVL SGRIEITVGA QRKILGPGDA YYFDSRAPHR FRQVGPEKCV LVSACTPPTF
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