Gene TM1040_3261 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_3261 
Symbol 
ID4075403 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008043 
Strand
Start bp261790 
End bp262362 
Gene Length573 bp 
Protein Length190 aa 
Translation table11 
GC content59% 
IMG OID638004770 
ProductXRE family transcriptional regulator 
Protein accessionYP_611497 
Protein GI99078239 
COG category[K] Transcription 
COG ID[COG1396] Predicted transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.957848 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.179215 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAACATAT CTAACGCTCA GGGCGCAGAC GAGGACCTCG GCCCGCGTCT GCGCAGCGTG 
CGGGAAAAGG CCAACCTGTC ACAACGTGCG TTGGCCAAGA AAACCGGCGT GCCGAACTCG
ACGATCTCAT TGATCGAGTC GGGCAAGATG AACCCTTCGG TGGGCGCGCT CCGGCGTATT
CTCGACGGGA TTCCGATCAG CCTTTCGGAC TTTTTTGCCT TTGAGCCCGA GACCGAGAAA
GCCAGCTTTT ATGCAGCCGA AGACCTCACC GAAATCGGCA AGGGCAAGGT CTCACTCAAG
CAGGTGGGCG CCAATCTTTT TGGGCGCCAG ATGATGATCC TCTACGAGAC CTACGAGATC
GGCGCGGATA CCGGGCGGGT GATGTATGGC CATGAGGGCG AAGAGGGGGG CATCGTGCTT
TCAGGGAGGA TTGAGATCAC GGTGGGTGCG CAGCGCAAAA TCCTTGGCCC CGGCGACGCC
TATTATTTCG ACAGCCGCGC GCCTCATCGG TTTCGCCAGG TCGGGCCTGA AAAATGCGTG
CTGGTCAGCG CCTGTACGCC ACCGACGTTT TAA
 
Protein sequence
MNISNAQGAD EDLGPRLRSV REKANLSQRA LAKKTGVPNS TISLIESGKM NPSVGALRRI 
LDGIPISLSD FFAFEPETEK ASFYAAEDLT EIGKGKVSLK QVGANLFGRQ MMILYETYEI
GADTGRVMYG HEGEEGGIVL SGRIEITVGA QRKILGPGDA YYFDSRAPHR FRQVGPEKCV
LVSACTPPTF