| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3257 |
|---|
| Symbol | |
|---|
| ID | 4075399 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008043 |
|---|
| Strand | - |
|---|
| Start bp | 258167 |
|---|
| End bp | 259543 |
|---|
| Gene Length | 1377 bp |
|---|
| Protein Length | 458 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 638004766 |
|---|
| Product | acetyl-CoA carboxylase biotin carboxylase subunit |
|---|
| Protein accession | YP_611493 |
|---|
| Protein GI | 99078235 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG4770] Acetyl/propionyl-CoA carboxylase, alpha subunit |
|---|
| TIGRFAM ID | [TIGR00514] acetyl-CoA carboxylase, biotin carboxylase subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.21701 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAATCC AACGACTTTT CATTGCCAAC CGGGGCGAAA TCGCGGTGCG GATTATCCGC
GCGGCGCAAG CCCTCGGCAT CCACACCATT CAAGCCCATT CCGAAGCTGA CGCCGATATG
CTGGCTGTCA AACTCGCCGA CGAGGCGGTT TTGATCGGCC CTGCTCCCGC AAAAGACAGC
TATCTCAACA TCGCGGCCAT CCTGAACGCT GCCAAGGACA CGGGCGCCGA CGCCATTCAT
CCGGGATATG GGTTCCTGTC CGAAAGCCCC ACCTTCGTCC GTGCGGTCGA AGACGCGGGT
CTGATCTTTG TCGGTCCCAG CGCCGATACC ATCGAACGCA TGGGGGATAA GGTTGCCGCG
CGGCAAGCGG CCGAAGCCGC AGGCGTGCCA GTCGTGCCCG GATCAAAAGG GCGCGTCGAC
ACCGTCGCCG AAGCGGTAGC AATTGCCGAA GAGATCGGGT TCCCGGTGAT GATCAAGGCC
GCGGCTGGCG GCGGCGGACG TGGCATTCGC GTGGCCACCA CCGCGCAAGA GCTAAAGTCG
CTCGCGCCAC AAGCCAAAGC CGAGGCCGAA GCTGCTTTTG GTGACGGGGG GCTTTATGTC
GAACGTGCGA TCCTGTCGCC GCGCCACATC GAAGTGCAAA TTCTGGGCGA TGGCGAAAAC
GCCGTGCATT GTTTTGAGCG CGAGTGCTCT TTGCAACGCC GGCGGCAGAA GGTCTGGGAA
GAGGCCGGGG CCGACTGTTT GGACGAGCAA ACGCGCGCAG CACTTTGCGC CTCTGCCGTG
GCGCTGGCCA AGGCCGTGAA TTACCGTGGC GCTGGGACAC TTGAATATCT CTATGACGCG
GCAAGCAATG AGTTCTTCTT TATCGAGATG AACACCCGCA TCCAGGTTGA ACACCCGGTA
ACGGAGATGA TCACCGGTGT CGATCTGGTG GCCGAGATGA TCAAGGTCTG CGCCGGGGCA
AAGCTCTCTA TGACTCAAGA CCAGATCACG CGCACCGGTC ATGCGATCGA GGTCCGCCTC
TGCGCCGAGG ATCCCTTCAT GGACTTCATG CCCTGGCCCG GTCAGGTGAA ATCCCTGAAA
ATCCCGACGG GCGAGGGGGT GCGCTTTGAT CACTTTCTGT CCGAGGGCTA TCAGATCCCG
CCGTTTTACG ACTCGCTGCT GGGCAAGGTC ATCGTCCACG CCGAGACCCG CGAAGCCGCC
ATCGACAAGC TGGTTGTCGC GTTGACCGAA TTGGACATCG ACGGAACAAA GACCACCGCA
CCGCTGCACC TTGCGCTGGC GGCTGATCCC GATGTCCGCG CGGGCGCGTT TCACACCCAA
TGGCTCGAAC CCTGGCTAGA GGCCGGGAAT CTCACTGCAA AAGGAGATGC CGCATGA
|
|---|
| Protein sequence | MTIQRLFIAN RGEIAVRIIR AAQALGIHTI QAHSEADADM LAVKLADEAV LIGPAPAKDS
YLNIAAILNA AKDTGADAIH PGYGFLSESP TFVRAVEDAG LIFVGPSADT IERMGDKVAA
RQAAEAAGVP VVPGSKGRVD TVAEAVAIAE EIGFPVMIKA AAGGGGRGIR VATTAQELKS
LAPQAKAEAE AAFGDGGLYV ERAILSPRHI EVQILGDGEN AVHCFERECS LQRRRQKVWE
EAGADCLDEQ TRAALCASAV ALAKAVNYRG AGTLEYLYDA ASNEFFFIEM NTRIQVEHPV
TEMITGVDLV AEMIKVCAGA KLSMTQDQIT RTGHAIEVRL CAEDPFMDFM PWPGQVKSLK
IPTGEGVRFD HFLSEGYQIP PFYDSLLGKV IVHAETREAA IDKLVVALTE LDIDGTKTTA
PLHLALAADP DVRAGAFHTQ WLEPWLEAGN LTAKGDAA
|
|---|
| |