| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3250 |
|---|
| Symbol | |
|---|
| ID | 4075392 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008043 |
|---|
| Strand | - |
|---|
| Start bp | 251761 |
|---|
| End bp | 252285 |
|---|
| Gene Length | 525 bp |
|---|
| Protein Length | 174 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 638004759 |
|---|
| Product | signal-transduction protein |
|---|
| Protein accession | YP_611486 |
|---|
| Protein GI | 99078228 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2905] Predicted signal-transduction protein containing cAMP-binding and CBS domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0271263 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGCTT CATTTACTCC CAAGACCCGC GGCTCCGAGA CATCGGATAA AAAGACCAGC
AGCCAGACAT TGGACACCAA TATGTCTGCT GCGCGGGCAA CCGTTGGCGA TGTGCTCGCA
AGCAAGAATG GCGAGCTTTA CTGGATCAAT CCCGAGGACA CTGTCGCCAA GGCCGTGGAG
GTTCTGCGCG ACAGGGGAAT TGGCGCGCTT TTGGTGAAAA ACGCGCAAGG TGACCTAGTC
GGGATTCTCT CGGAGCGCGA CATCGTGCGT CGGTTGGCGG ACACGCCCGG CGCCACCTTG
CCGCAAACGG TCGAAGGCCT GATGTCGCGC GACGTCATCA CCGCAACCAC GGATCAGTCG
GTGGTCGAGG TGCTGCGCCT GATGACAGAC GGGCGCTTCC GCCACATGCC GGTGCTGGAA
CAAGAGCAGC TCGTCGGGAT GATCACCATC GGAGACGTGG TGAACTTCCG ACTGACGGCG
CTTGAATATG AAGCGCTGCA GCTCAAACAG CTTATTGTTG GATGA
|
|---|
| Protein sequence | MPASFTPKTR GSETSDKKTS SQTLDTNMSA ARATVGDVLA SKNGELYWIN PEDTVAKAVE
VLRDRGIGAL LVKNAQGDLV GILSERDIVR RLADTPGATL PQTVEGLMSR DVITATTDQS
VVEVLRLMTD GRFRHMPVLE QEQLVGMITI GDVVNFRLTA LEYEALQLKQ LIVG
|
|---|
| |