Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_3197 |
Symbol | |
ID | 4075301 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008043 |
Strand | + |
Start bp | 191776 |
End bp | 193065 |
Gene Length | 1290 bp |
Protein Length | 429 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 638004706 |
Product | TRAP dicarboxylate transporter- DctM subunit |
Protein accession | YP_611433 |
Protein GI | 99078175 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.165915 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCATAA TCGGAAGTCT CGTCATCGTG TGCGCCATGC TCCTATTGGG AGTCAGTGTC TTTGTGGCCT TTGGCGCGGT GTTGATGTTC ATCGCGGTCT TTGGCGATCA GTCCATCACC GGCTATCTTC CAACCGGGGC GACGGGTCTG CGGTCATTGG TGTTGCTCGC CATTCCGCTC TTTATGATTG CAGGCGGCGT GATGGAGCGC GGGCGGATCG CAGCCCCCCT CGTGGCCATC GCAGAGATGT TTGTCGGCCA CCTCAAGGGC GGACTGAGCG CGGCCGCCGT CATGGCCTGT GGCATCTTCG GCTCCATCGC GGGCAGTGCC AACTCAACGC TGACCTGCAT TGGTGGCATC ATGCTGCCGC ATCTGAAAAA GGCGAACTAC CCCGAAGGCA AATCCGCAGC GCTCCTTGTG GCGGCAAGCC CACTGGGCCT TCTGATCCCG CCAAGTGCCA ACCACATCCT CTATGGCTGG GTGGCGCAAC AGCACGTTTT GAAATGCTTT TTGTCGACGG TCATCCCGGC CTTCATCCTG ATCACGCTGC TGATCATCAC CAACCATTTC ATGTTGCGCA AACATGACGA CATCAAGCTC TCTGCCCCAC CCTCCCCGTT TTTCCCGGCG CTCAGGGCCC AGGGACGTGT CGCCGGCCCG GCGCTGATGA TGCCGATCAT CATTCTTGGC GGTATCTACG GCGGGATCAT GACGCCGACC GAGGCTGCGG GCATCGCCGT TGTCTATGCG ATCCCGGTTG CGATCTACTT CTATCGCGGC TTGACGTGGA AGGGTTTGAT CGAAACGTTT CAGAAGTCGG GGATCACGAT TGGCGTCGTT ATGATCATGA TCTTCATGGT CCTCATAGTC TCTGACAACC TCATTGCACA GGGCGCACCG CAGATTGCGC AGCAGATGGT CTACTCGGTC TCTGACAATC CCATTGTGAT CTTGCTGATG ATCAATGTGG TCATGATCCT GATCGGGATG CTGATGGACG ATATTTCGGG ACTGCTGCTG TCGACACCAA TCCTGTTGCC AATCGCGCAA AGCGTGGGCA TGGATCCGAT CCATTTTGCG GCCGTGATCG GCGTTAATCT GGGTATGGCC AATATCACGC CGCCGACCGC ACCGCTGTTG TATCTGGGCG CTCAGGTCTC GGAGACGCCG GTTGCAAAGA TGCTCATACC CACGCTGATG TTCATCATCT TTGCTTGGTT GCCGACCCTG ATGCTCACGA CCTTTGTGCC CTCGGTTGCA CTTTGGCTGC CGGAACTCCT ACTGGGCTAA
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Protein sequence | MIIIGSLVIV CAMLLLGVSV FVAFGAVLMF IAVFGDQSIT GYLPTGATGL RSLVLLAIPL FMIAGGVMER GRIAAPLVAI AEMFVGHLKG GLSAAAVMAC GIFGSIAGSA NSTLTCIGGI MLPHLKKANY PEGKSAALLV AASPLGLLIP PSANHILYGW VAQQHVLKCF LSTVIPAFIL ITLLIITNHF MLRKHDDIKL SAPPSPFFPA LRAQGRVAGP ALMMPIIILG GIYGGIMTPT EAAGIAVVYA IPVAIYFYRG LTWKGLIETF QKSGITIGVV MIMIFMVLIV SDNLIAQGAP QIAQQMVYSV SDNPIVILLM INVVMILIGM LMDDISGLLL STPILLPIAQ SVGMDPIHFA AVIGVNLGMA NITPPTAPLL YLGAQVSETP VAKMLIPTLM FIIFAWLPTL MLTTFVPSVA LWLPELLLG
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