| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3195 |
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| Symbol | |
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| ID | 4075299 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | + |
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| Start bp | 190067 |
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| End bp | 191065 |
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| Gene Length | 999 bp |
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| Protein Length | 332 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 638004704 |
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| Product | TRAP dicarboxylate transporter- DctP subunit |
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| Protein accession | YP_611431 |
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| Protein GI | 99078173 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.166744 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.659935 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGTGT TTTTGAAAGC CGTGGCCGTC GGCACGATGG CCCTCCACCT TGCCACGCCG
GCCTTCGCCG ACGACATCAA GCTGCGCTTT GCAGGCGTGT TCCCCATCGA CCATCAAGGC
ACAAAGATGA TGGAACAGGT CGCTGCAGAG GTGAACGCAG CGAATGTTGG TCTCGACATG
ACGGTTTTTC CCGCCAGCCA GCTCGGCTCC GGTGAAGCCC TGTTCGAAGA CGTTGCGCGC
GGCAACATCG ATTTTGCATC GGCTTTCATT TACTCCGATA CGGATCCCCG TCTGGAATTC
CTGAACATGC CGTTCCTTGT CAGCAGCTAT GATGACATGG ACCGCGTCCT GCGCGACATG
GATTCAGATT ACAATCGCAT CCTGCAGGAC ATTACCGCCG AATATGGTGT GCGCGTGATG
GCCGCGAACC CCGAGGGCTT TGTCGGCATC GTGGCCTCCA AGGAGCCCGA CAACTGGAAC
ACCTTCGACG ACAAAGGCAT GAACATCCGC GTCTGGTCGT CAAACGCTGT AAAGGCCACC
GTCGAGTCCC TCGGCTATCG TGCGACCACA ATGGCATGGG GTGACATCTT CCCGGCGCTT
CAGTCCGGCA TCGTCGACGG CGCGATCTGC TGCACAAAAA CCGCGACATA CTCGATCTTT
GCTAAATCCG ACGTCGGCAG CCACTTCATC GAGTATAACT CTTTGCTGGA ACAGACATTC
TACTATGGCT CCGAGCGCAC CCTCGCCAAG CTGAACGACG AGCAGCGCGA CGTCATTCAA
GCTGCGATGA GCAAAGCCTC GGCCGACTTC TTCGCCTACA ACCGCGAAAA CGACGCAGCC
TTCGGTCAAA AGCTGATCGA CAGCGGCTAC ACCATTTTGA AGCTCAACGA CGAGGATCAA
CAGGCGATGG CCGAGTATGT GCGCAAAACC ATCTGGCCGA CAATGGAAAG CGCAGTCGGC
AAAGACGTCA TCGATCGCGT GCTGGCGGCT GTTCAATAA
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| Protein sequence | MNVFLKAVAV GTMALHLATP AFADDIKLRF AGVFPIDHQG TKMMEQVAAE VNAANVGLDM
TVFPASQLGS GEALFEDVAR GNIDFASAFI YSDTDPRLEF LNMPFLVSSY DDMDRVLRDM
DSDYNRILQD ITAEYGVRVM AANPEGFVGI VASKEPDNWN TFDDKGMNIR VWSSNAVKAT
VESLGYRATT MAWGDIFPAL QSGIVDGAIC CTKTATYSIF AKSDVGSHFI EYNSLLEQTF
YYGSERTLAK LNDEQRDVIQ AAMSKASADF FAYNRENDAA FGQKLIDSGY TILKLNDEDQ
QAMAEYVRKT IWPTMESAVG KDVIDRVLAA VQ
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