Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_3190 |
Symbol | |
ID | 4075294 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008043 |
Strand | - |
Start bp | 181083 |
End bp | 183857 |
Gene Length | 2775 bp |
Protein Length | 924 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 638004699 |
Product | formate dehydrogenase, alpha subunit |
Protein accession | YP_611426 |
Protein GI | 99078168 |
COG category | [R] General function prediction only |
COG ID | [COG3383] Uncharacterized anaerobic dehydrogenase |
TIGRFAM ID | [TIGR01591] formate dehydrogenase, alpha subunit, archaeal-type |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.523924 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCGATA AAATCACCTT TACGCTCGAC GGCGCGCAAG TCACCGCCGA CGCTGGCATG ACCATCTGGG AAGTCGCCAA TGGCCGCGGC CTCAAGATCC CGCATCTCTG CCACAAGCCG CAGCCCGGCT ATCGCCCCGA CGGCAATTGC CGCGCGTGCA TGGTCGAGAT CGAGGGCGAG CGCACGCTTG CGGCCTCCTG CATTCGCGAG CCCAGTGAGG GCATGGTTGT CACCACCAAC AATGCACGCG CCGAAAACGC GCGAAAGATG GTGATGGAGC TGCTGGTTGC GGATCAGCCC GCGCAGGAGG TTGCGCATGA TAAGTCCTCG CATATGTGGG ATATGGCAGA GTTGAACGGG GTTTCGGAGT CGCGCTTTCC CAAGCTCGAA GAGGGGCACA TCCCGCTTTT GGATGACAGC CATGTCGCCA TGAGCGTAAA CCTTGATGCC TGTATCTCTT GCGGGCTCTG CGTGCGCGCC TGCCGTGAAG TGCAGGTGAA CGACGTGATT GGTATGGCGG GCCGGGGGCA CAATGCCTAT CCGACCTTTG ATATTGCCGA CCCGATGGGC GAGTCCTCCT GCGTGGCCTG CGGCGAATGC GTGCAGGCCT GCCCGACGGG CGCACTGATG CCCGCGACCG TGGTGGATGA AAACCAGGTG GGCGATCGCA AGGACTTTGA TTCAGAAACC GAAAGCGTCT GCCCCTTCTG CGGGGTCGGC TGCAAAGTCT CGCTCAAGGT GAAAGATGGT AAGGTCAAAT ATGTCGAGGG CATCAATGGC CCCGCGAACG AAGGCCGTCT CTGCGTGAAA GGTCGTTTCG GCTTTGACTA TATCCACCAT CCGCACCGCC TCACCAAACC ACTGATCCGT CGCGAGGATG CACCGGACAA AGGGCTGAAT GTCGATCCCG GGAACCTGAT GACTCACTTC CGCGAGGCAA GCTGGGATGA GGCGATGGAT CTGGCCGCGA AAGGTCTGAT CAAGCTGCGG GACGCAGACC CCAAATCTGT CGCAGGTTTT GGGTCGGCAA AATGCACCAA TGAAGAAGCC TATCTCTTCC AGAAGTTTAT TCGTCAGGGC TTCAAGCACA ACAACGTCGA TCACTGCACC CGCCTGTGTC ATGCCTCTTC TGTGGCGGCA CTGATCGAGA ACGTGGGCTC GGGGGCTGTG ACCGCAACCT TCAACGAGAT CGAGAACGCG GATGTAGCGA TCATCATCGG CGCCAACCCG ATTGAGAACC ACCCTGTTGC TGCGACCTAT TTCAAGCAGT TCACCAAACG CGGTGGCAAG CTGATTGTGA TGGATCCGCG CGGTGTCGGC ATGCGCCGAT ATGCGGACGA GATGCTCCAG TTCCGTCCAG GTGCCGATGT GTCGATGCTC AATGCGATCA TGAACGTGAT CGTGGAAGAA GAGCTCTATG ACAGCCAGTA TATCCACCGC TGGACCGAAA ACTGGGAGGC TGAAAAAGAG CACCTGCGCC AGTTCACGCC AGAAAAGATG TCGGAAATCT GCGGCATCGA GCCAGAGCAG CTGCGCCGTG TGGCCCGGAC CTTTGCAGGT GCCGAGGCGG GGATGATCTT CTGGGGCATG GGCGTCAGCC AGCACATTCA CGGCACTGAC AACTCGCGGT GCCTGATCTC GCTGGCCTTG ATGACAGGCA ATGTCGGTAA ACCCGGTGCG GGCCTGCACC CCTTGCGGGG TCAGAACAAT GTGCAGGGTG CGTCGGATGC GGGTCTCATT CCGATGTTCC TGCCGGACTA CCAGACTGTC ACCTCTGACG ATGTCCGTCG CAGCTTTACA GATGTCTGGG GTGGGGGCGA TTTCTCCAAT GAGAAGGGCC TCACCGTGAC AGAAATCGTG GATCAGGTTT ATGCGGGCAA TATCAAAGGC ATGTACATTC AGGGCGAGAA CCCTGCCATG TCCGACCCTG ACGCCGATCA CGCGCGCGAG GCCTTTGCCA AGCTCGACCT GATGATCGTG CAGGATATTT TCCTGACCGA GACGGCGAAT TTCGCCGACA TCATCCTGCC CGCCTCGACC CTTTATGAAA AGAACGGCAC GGTGTCCAAT ACCAACCGTC AGGTGCAGCG CGTGCGGCCT GCCGTCACCC CTCCGGGTGA GGCGCGCGAG GATTGGAAGA TCACCGTAGA ATTGGCACAG CGGATCGGTT TGCCTTGGGC CTATAGTGAT GTTTCAGAGG TTTTTGCCGA GATGAAACTC AATATGAAGT CGCTCGACAA TATCACCTGG GAACGTCTGG AGGTGGAGAC CATCACCTAT CCCTCGCTGC ATGAGACCGA CCCGGGTCAG GCGATTGTGT TTGGCGATGG CTTCCCGCGC CCCGAGGGGC GGGCGAGATT TACGCCTGCC TCGGTGATCC CGCCGGATGA GGCCCCGGAT GCGGACTTCC CGATGATCAT GACCACGGGG CGTCAGCTCG AACATTGGCA TACGGGCTCC ATGACGCGGC GCTCGCTTGT GTTGGATGCG GTTGAGCCGG AGGCAAACTG TTCGTTGCAT CCGCGTACCC TGCGCACCCT TGGGGTTGAG CCGGGCGAGA TGGTTCGACT GTCCACGCGT CGCGGCTCGA TCGAGATCAT GGCTCGTGCG GACCGCGCGG TGGCCGAAGA CATGGTCTTT GTGCCCTTTG CCTATGTCGA GGCAGCGGCC AATATCCTGA CCAACCCGGC AATCGATCCC TACGGCAAGA TCCCCGAGTT CAAGTTCTCG GCTGTGCGGG TTGAGAAGGC AGAAGGGCAG ATCGCAGCCG AGTGA
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Protein sequence | MSDKITFTLD GAQVTADAGM TIWEVANGRG LKIPHLCHKP QPGYRPDGNC RACMVEIEGE RTLAASCIRE PSEGMVVTTN NARAENARKM VMELLVADQP AQEVAHDKSS HMWDMAELNG VSESRFPKLE EGHIPLLDDS HVAMSVNLDA CISCGLCVRA CREVQVNDVI GMAGRGHNAY PTFDIADPMG ESSCVACGEC VQACPTGALM PATVVDENQV GDRKDFDSET ESVCPFCGVG CKVSLKVKDG KVKYVEGING PANEGRLCVK GRFGFDYIHH PHRLTKPLIR REDAPDKGLN VDPGNLMTHF REASWDEAMD LAAKGLIKLR DADPKSVAGF GSAKCTNEEA YLFQKFIRQG FKHNNVDHCT RLCHASSVAA LIENVGSGAV TATFNEIENA DVAIIIGANP IENHPVAATY FKQFTKRGGK LIVMDPRGVG MRRYADEMLQ FRPGADVSML NAIMNVIVEE ELYDSQYIHR WTENWEAEKE HLRQFTPEKM SEICGIEPEQ LRRVARTFAG AEAGMIFWGM GVSQHIHGTD NSRCLISLAL MTGNVGKPGA GLHPLRGQNN VQGASDAGLI PMFLPDYQTV TSDDVRRSFT DVWGGGDFSN EKGLTVTEIV DQVYAGNIKG MYIQGENPAM SDPDADHARE AFAKLDLMIV QDIFLTETAN FADIILPAST LYEKNGTVSN TNRQVQRVRP AVTPPGEARE DWKITVELAQ RIGLPWAYSD VSEVFAEMKL NMKSLDNITW ERLEVETITY PSLHETDPGQ AIVFGDGFPR PEGRARFTPA SVIPPDEAPD ADFPMIMTTG RQLEHWHTGS MTRRSLVLDA VEPEANCSLH PRTLRTLGVE PGEMVRLSTR RGSIEIMARA DRAVAEDMVF VPFAYVEAAA NILTNPAIDP YGKIPEFKFS AVRVEKAEGQ IAAE
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