| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3185 |
|---|
| Symbol | |
|---|
| ID | 4075355 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008043 |
|---|
| Strand | + |
|---|
| Start bp | 170270 |
|---|
| End bp | 171157 |
|---|
| Gene Length | 888 bp |
|---|
| Protein Length | 295 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 638004688 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_611421 |
|---|
| Protein GI | 99078163 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.377934 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.982451 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACATTCG GTCAGCTCGA AATCTTCGTT GCACTTTCCG AGGCCCAGAG CTTTACCCTC
ACCGCACGCC GTCTCGGGAT CAGTCAGCCT GCGGTGTCTC ACGCGCTGAA ATCTCTCGAG
ACCGCGCTGA ATGTCAGCCT GTTCGACCGT CAGGGGTCGC AGATCGTGCT GACACCGATT
GGAGCACAAC TGCTTGAACG CGCGCGCGAA ATTCTTGGCC TGTCGCGCAC CATGCAACAG
GAGGCGGCCT CTTTTCGCGG CCTGGACACC GGCAGCCTGC GCATCGGCTC TTTTGGGGCA
ACATCTTCGT TGCAACTTCT TCCAGATCTC ATGAGCGCGT TTCACCGCGC CTACCCCGGC
ATCGACGTGT TCATCGAGGA AGCCGCCGAC GACATCATCG TCAAATGGCT CGAAGAACGC
CGCATCGACA TGGGATTTGT GGTGCTGCCA GATGATCGGT TTGAGACCAT TCCGATTGCG
ACAGACCAAT TTGTCGCCCT GGTGCCGAGA CAGAGCGCAC TTGCAAAACA GGAGCGCGTG
ACCCTGAGTG ATCTGTGCAA TGATCCCTTC ATCATGCCTG AATCCGGGTC CGTCAAAATT
GTGAGCGCGC TTTTTGCCGC TGCGGGACTT ACACCCCAAA CGCGCTACCG CACCTCGCAG
CTTTTGAGCA CGCTGTCGAT GGTTGGCCGG GGCCAAGGTG TGTCTGTTGT TGCAGAGATG
GCCGTTCCTG CGGCGCACCC TGACAACCCT TGGGTCATCC GGCCCCTTTC GCCTGCGCAT
CCCCGCATGA TCGGTCTCGC CCTTCACCCT ACTGCGGTTC GCTCTCCGGC GGTCACGGCC
TTTCTCAGGA TCGCAAAGAC TCTTCGGACC CGCCCAAAGT GCGCTTAA
|
|---|
| Protein sequence | MTFGQLEIFV ALSEAQSFTL TARRLGISQP AVSHALKSLE TALNVSLFDR QGSQIVLTPI
GAQLLERARE ILGLSRTMQQ EAASFRGLDT GSLRIGSFGA TSSLQLLPDL MSAFHRAYPG
IDVFIEEAAD DIIVKWLEER RIDMGFVVLP DDRFETIPIA TDQFVALVPR QSALAKQERV
TLSDLCNDPF IMPESGSVKI VSALFAAAGL TPQTRYRTSQ LLSTLSMVGR GQGVSVVAEM
AVPAAHPDNP WVIRPLSPAH PRMIGLALHP TAVRSPAVTA FLRIAKTLRT RPKCA
|
|---|
| |