| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3178 |
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| Symbol | |
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| ID | 4075348 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | + |
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| Start bp | 161441 |
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| End bp | 162601 |
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| Gene Length | 1161 bp |
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| Protein Length | 386 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 638004681 |
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| Product | extracellular ligand-binding receptor |
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| Protein accession | YP_611414 |
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| Protein GI | 99078156 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.677267 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.56284 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTCTCA AGAAAACGAT GCTTGCCGCT GCTGCGGCTT TGGCATTTCC CCTCATTGCG
TCCGCCGAGC AAGGCGTGAC TGGCGACAGT GTCACATTTG CACAGGTTGC CGCCTTTGAT
GGGCCAGCCG CTGCACTCGG CACCGGCATG CGCCTTGGCA TTACCGCAGC CTTTGAGGAA
GCAAACGCCG CAGGTGGTGT GCACGGGCGG ATGCTGAAAC TCGACAGTAT GGATGACGGC
TACGAGCCCG ACCGCTCTGC CGCTTTGGTC AAGACCGTGA TCGAAGGCAA TGGCCATATT
GGTCTGATTG GCGCGGTGGG CACCCCGACC TCCTCTGCGA CGCAGCCCAT CGCTACCGAG
GCCAATGTTC CCTTCATCGG CCCCTTCACC GGCGCGGGCT TCTTGCGCGA CGCCTCTCAT
GGCAACATCT ACAATGTGCG CGCCAGCTAT TTTGCGGAAA CCGAAGCCTG GATCGAATAT
CTCGTCGATC AGCAAGGCAT GAAGTCGATC GCGATCCTCT ATCAGGACGA CGGCTTTGGC
CGCGTGGGGC TGAACGGCGT CACCGCTGCG CTTGAAAAAC GCGGCATGAG CCTCGCGGCA
GAAGGCACAT ATACCCGCAA CACCACCGCC GTCAAAAAGG CGCTGCTGGC GATCCGCAAG
GCGAAGCCCG ATGCGGTGGT CATGGTCGGC GCCTATAAAC CGGTGGCCGA ATTCATCAAA
CTCGCGCGCA AAATGAAGCT CGACTCGGAG TTCGTGAATA TCTCCTTTGT CGGCTCTGAC
GCTCTGGCAC AGGAATTGGG CGAGCATGGC GAAGGTGTGA TCATCAGCCA GGTGGTGCCC
TTCCCGTGGG ACATGTCGAT CCCGGTTGTC GCGCAATATA CCGAAGCCCT GAAGGCCGTG
GATGCCGCCG CCAAGCCCGG CTTTGTGTCG CTTGAAGGCT ATATCGTCGG TCGTCTCGCC
ATTGCCGGTC TCGAAGCCGC AGGCAAGGAG CTGACCCGTG ACTCCTATCT TGCCGCTCTG
GCAGGACTCT CCACGGTCGA TCTCGGCGGT GTCAGCATGG TCTTTGGTGC GGACGACAAC
CAGGGCATGG ATGACGTGTT CCTGACCCGT ATCACGGCAG ACGGCCAGTT CGAGCCCATC
GTATCCGGCG GCGGCTCCTA A
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| Protein sequence | MFLKKTMLAA AAALAFPLIA SAEQGVTGDS VTFAQVAAFD GPAAALGTGM RLGITAAFEE
ANAAGGVHGR MLKLDSMDDG YEPDRSAALV KTVIEGNGHI GLIGAVGTPT SSATQPIATE
ANVPFIGPFT GAGFLRDASH GNIYNVRASY FAETEAWIEY LVDQQGMKSI AILYQDDGFG
RVGLNGVTAA LEKRGMSLAA EGTYTRNTTA VKKALLAIRK AKPDAVVMVG AYKPVAEFIK
LARKMKLDSE FVNISFVGSD ALAQELGEHG EGVIISQVVP FPWDMSIPVV AQYTEALKAV
DAAAKPGFVS LEGYIVGRLA IAGLEAAGKE LTRDSYLAAL AGLSTVDLGG VSMVFGADDN
QGMDDVFLTR ITADGQFEPI VSGGGS
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