| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3175 |
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| Symbol | |
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| ID | 4075345 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | + |
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| Start bp | 156210 |
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| End bp | 157508 |
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| Gene Length | 1299 bp |
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| Protein Length | 432 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638004678 |
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| Product | inner-membrane translocator |
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| Protein accession | YP_611411 |
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| Protein GI | 99078153 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG4214] ABC-type xylose transport system, permease component |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.235979 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.918158 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGACA CCACGTCTCA GCCAATCACC CCACAAAACA AGCGCAATCT CTTCCAGCAG
CTTGAGCTGG ACGTGCGGCT ATTGGGTATG ATTGGCGCCT TTATCATCCT CTGCATCGGG
TTCAATCTGG TGACCGACGG GCGGTTCTTG ACCCCGCGCA ACATCTTCAA CCTGACGATT
CAGACGGTTT CCGTGGCGAT CATGGCCTCT GGCATGGTGT TTGTGATCGT TACCCGCCAC
ATCGACCTGA GCGTCGGCGC ATTGCTCGCG ACCTGCTCGG CAGTGATGGC GATGACGCAA
ACCGAATTTG TGCCCCATGT TCTCGGGCTT GGTCTCAACC ACCCGATCAC ATGGATCGTG
GCAGTCGTGG TGGGTCTGGT CACGGGCACG CTGATCGGTG CCTTCCACGG CTGGATGGTC
GGCTATCTGA CAATCCCGGC CTTTATCGTG ACGCTTGGTG GCTTTCTCGT CTGGCGCAAC
GTGGCGTGGT ATCTGACCGA CGGGCAGACC ATCGGCCCGC TCGATTCCAC CTTCATGATG
TTTGGCGGCA CAAATGGCAC CCTTGGCACC TCGCTGAGCT GGATTCTGGG GCTGGTGGCC
ACGGCGTTGG CGCTCCTGAC ACTCTGGAAC AGCCGCCGCG CAAAGCTCGC GCATGAATTC
CCGGTAAAAC CGCTCTGGGC CGAAGGCGCC TTGGCGCTGA TCATCTCCGG CTCGATCCTC
GGGTTTGTCG CGATCCTCAA CGCCTATGAG ATCCCCTCGC GTCGTCTGGC GCGCATGTTC
GAGGCCCGTG GCGAAGTGAT GCCCGAAGGC TTCACCCAAG GCTACGGCCT ACCGATCTCG
GTGCTGATCC TGATCGCGGT GGCCGTGGTC ATGACCCTGA TCGCACGCCG CACTCGGTTG
GGTCGCTATA TCTTCGCCAC CGGCGGCAAT CCGGATGCGG CAGAGCTCTC GGGGATCAAC
ACCCGCATGC TCACCGTGAA GATCTTTGCC ATCATGGGCT TTCTCTGTGC ACTCTCGGCA
GTCGTGGCCT CGGCCCGTCT GGCGAACCAC TCCAACGATA TCGGCACCCT GGACGAACTG
CGCGTCATCG CGGCAGCCGT CATTGGCGGC ACCGCGCTCT CGGGTGGGTT TGGCACCATC
TATGGCGCTA TCCTCGGCGC ACTCATCATG CAAAGCCTTC AGTCCGGCAT GGCCATGGTG
GGTGTCGACG CCCCGTTCCA GAACATCGTT GTGGGCACCG TGCTGGTCGC GGCCGTCTTC
ATCGACATCA TCTATCGCAA GCGTGTGGGG GCCAAGTAA
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| Protein sequence | MTDTTSQPIT PQNKRNLFQQ LELDVRLLGM IGAFIILCIG FNLVTDGRFL TPRNIFNLTI
QTVSVAIMAS GMVFVIVTRH IDLSVGALLA TCSAVMAMTQ TEFVPHVLGL GLNHPITWIV
AVVVGLVTGT LIGAFHGWMV GYLTIPAFIV TLGGFLVWRN VAWYLTDGQT IGPLDSTFMM
FGGTNGTLGT SLSWILGLVA TALALLTLWN SRRAKLAHEF PVKPLWAEGA LALIISGSIL
GFVAILNAYE IPSRRLARMF EARGEVMPEG FTQGYGLPIS VLILIAVAVV MTLIARRTRL
GRYIFATGGN PDAAELSGIN TRMLTVKIFA IMGFLCALSA VVASARLANH SNDIGTLDEL
RVIAAAVIGG TALSGGFGTI YGAILGALIM QSLQSGMAMV GVDAPFQNIV VGTVLVAAVF
IDIIYRKRVG AK
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