| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3153 |
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| Symbol | |
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| ID | 4075323 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | + |
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| Start bp | 133822 |
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| End bp | 135075 |
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| Gene Length | 1254 bp |
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| Protein Length | 417 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638004656 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_611389 |
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| Protein GI | 99078131 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.000182033 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAGTA AGTTTATGAT GGCCGCGCTG ACGGGCACTG CCCTGGTGGC CACTTCCGCA
CTGGCCGAGG ATGTCACCCT CACTGTCGAA AGCTGGCGCA ATGACGACCT GACGCTCTGG
CAGGACAAGA TCATCCCCGC GTTCGAAGCC GCAAACCCCG GCATCAAGGT GAAATTCACC
CCCAGCGCGC CGACCGAATA CAACGCGGTC CTGAACTCCA AGCTGGACGC AGGCTCTGCT
GGTGATCTGA TCACCTGCCG CCCGTTTGAC GCCTCGCTTG CGCTCTATGA GGCGGGCCAC
CTCGCCGCGC TGGATGATAT GGACGCGATG AGCAACTTCT CTGACGTCGC CAAATCCGCA
TGGCAGACCG ACGATGGCTC CGCGAGCTTC TGTGTGCCGA TGGCCTCCGT GATCCACGGC
TTTATCTACA ACAAAGAGGC CTTCGAAGAG CTCGGCCTTG AGGTTCCGAC CACCGAAGAC
GAATTCTTTG CCGCGCTTGA GACCATCAAG GAAGACGGCA GCTATATCCC GATGGCGATG
GGCACCAACG ACCAGTGGGA AGCCGCCACC ATGGGCTATA ACAACATCGG CCCGAACTAC
TGGAAAGGCG AAGAAGGCCG TCGCGCCCTG ATCGCGGGCG AGCAGAAGCT CACCGACGAA
CAATGGGTTG CCCCCTATGC GACCCTCGCC AAATGGGCGG ATTATCTGGG CGACGGCTAT
GAGGCGCAGA CCTATCCTGA CAGCCAGAAC CTCTTCACGC TGGGCCGCGC GGCGATCTAT
CCGGCAGGCA GCTGGGAAAT TTCTGGCTTC AACGCGCAAG CCGATTTTGA AATGGGCGCC
TTCAAGGCTC CGGTCAAATC CGCAGGCGAC ACCTGCTATA TCTCGGACCA CACCGACATT
GGTATTGGCA TGAACGCCTC CACCGAGCAC CCCGAAGCCG CCAAGGCCTT CCTCGCCTGG
GTCGCATCGC CCGAGTTCGC GGACATCTTC GGCAACGCTC TGCCGGGCTT CTTCCCGCTC
TCCAATGCGC CGGTTGAGCT CGAAGATCCG CTGGCCAAGG AATTTGTAAG CTGGCGTGGC
GAGTGCGAGA GCACCATCCG CTCCACCTAC CAGATCCTGT CGCGCGGCAC GCCGAACCTC
GAAAACGAGA CCTGGGGCGC ATCCGTTGCC GCAATCAAAG GCACCGAAAC GCCCGAAGCT
CTGGGCGAAA AACTCCAGTC GGGTCTCGCA ACCTGGTACG AACCGCAACA GTAA
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| Protein sequence | MKSKFMMAAL TGTALVATSA LAEDVTLTVE SWRNDDLTLW QDKIIPAFEA ANPGIKVKFT
PSAPTEYNAV LNSKLDAGSA GDLITCRPFD ASLALYEAGH LAALDDMDAM SNFSDVAKSA
WQTDDGSASF CVPMASVIHG FIYNKEAFEE LGLEVPTTED EFFAALETIK EDGSYIPMAM
GTNDQWEAAT MGYNNIGPNY WKGEEGRRAL IAGEQKLTDE QWVAPYATLA KWADYLGDGY
EAQTYPDSQN LFTLGRAAIY PAGSWEISGF NAQADFEMGA FKAPVKSAGD TCYISDHTDI
GIGMNASTEH PEAAKAFLAW VASPEFADIF GNALPGFFPL SNAPVELEDP LAKEFVSWRG
ECESTIRSTY QILSRGTPNL ENETWGASVA AIKGTETPEA LGEKLQSGLA TWYEPQQ
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