| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3142 |
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| Symbol | |
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| ID | 4075014 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | - |
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| Start bp | 120640 |
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| End bp | 121620 |
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| Gene Length | 981 bp |
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| Protein Length | 326 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638004645 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_611378 |
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| Protein GI | 99078120 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.115178 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCGCTT ATATCATCCG GCGCGTGGCC CAATCCGCGC TGGTTCTTCT TATCGTAGGA
CTCGTGGCCT TTGCCATGTT CCGCTTTGTC GGCGACCCGA TCGACAACAT GCTGGGCCAG
GAGCGCACCG CCGAAGACAT CGAGCGTCTG CGCGCACAAC TTGGCCTCGA CCAGCCCTTT
GTGGTGCAAT ACTACCGGTT CCTCGAGAAC GCCGTGCAAG GCAATTTCGG GGTCAGCTAC
CGGCAGGGGC GGCCCGTCAT CGACATCCTG ATGGAACGTG CGCCCGCAAC ACTGGAGCTG
GCGGCGGTCT CGGGCATTCT GGCGATCATA TTCGGCATTG CGCTCGGGGT CTTCACGGCC
ATCAAACGCA ACGGGATCGC GGCCAATCTC ATCATGTCAG GCTCGCTCAT AGGGGTGTCG
TTGCCGACGT TCCTGATCGG GATTTTGCTG ATCTATCTGT TCTCCGTCGA ACTCGGCTGG
CTGCCGAGTT TCGGGCGCGG CGATGTCGTC GATCTGGGCG GTTGGAGTAC CGGGTTCCTT
ACGGTGAGCG GTCTCAAGGC GCTGATCTTG CCGTCGATCA CACTCGGGCT CTATCAGATG
ACGCTGATCA TGCGGCTGGT GCGCTCCGAG ATGCTCGAAG TGCTGAGGCA GGATTATATC
CGCTTTGCCC GCGCCCGTGG CCTGCGCGAC CGGGCGGTGC ATTTCCGCCA TGCGCTCAAG
AACACCATGG TACCCGTGAT CACCGTGATC GGCCTGCAAG TGGGCGCGAT CATCGCCTTT
GCGATCATCA CCGAGACGGT GTTCCAGTGG CCAGGCGTGG GCCTGTTGTT CATCAACGCG
ATCCAGTTCG TCGATATTCC CGTCATGGCG GCGTATCTTA TGCTGATCTC GGTGATGTTT
GTCGGCATCA ACCTTATCGT CGATATCCTC TATTTCTTTA TCGATCCGCG TCTGCGCGTT
GATCGCAAGG GAGGTCACTA A
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| Protein sequence | MLAYIIRRVA QSALVLLIVG LVAFAMFRFV GDPIDNMLGQ ERTAEDIERL RAQLGLDQPF
VVQYYRFLEN AVQGNFGVSY RQGRPVIDIL MERAPATLEL AAVSGILAII FGIALGVFTA
IKRNGIAANL IMSGSLIGVS LPTFLIGILL IYLFSVELGW LPSFGRGDVV DLGGWSTGFL
TVSGLKALIL PSITLGLYQM TLIMRLVRSE MLEVLRQDYI RFARARGLRD RAVHFRHALK
NTMVPVITVI GLQVGAIIAF AIITETVFQW PGVGLLFINA IQFVDIPVMA AYLMLISVMF
VGINLIVDIL YFFIDPRLRV DRKGGH
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