Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_3140 |
Symbol | |
ID | 4075012 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008043 |
Strand | - |
Start bp | 118725 |
End bp | 119699 |
Gene Length | 975 bp |
Protein Length | 324 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 638004643 |
Product | oligopeptide/dipeptide ABC transporter, ATP-binding protein-like |
Protein accession | YP_611376 |
Protein GI | 99078118 |
COG category | [E] Amino acid transport and metabolism [P] Inorganic ion transport and metabolism |
COG ID | [COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component |
TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.141396 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCTGACC CTGTTCTGTC CATCCGCAAC CTTTGTGTGG AAATCCCGAC CCGCCACGGC ATCCTGAAAC CGGTCGATGG CGTCTCTTAT GACATTGCCA AGGGCGAAAT CCTTGGCATC GTTGGCGAAA GTGGCGCCGG CAAGTCGATG GCGGGCAATG CCGTCATTGG TCTCCTGAAC CCGCCGGCGC ATGTGTCTTC CGGTGAGATC TGGCTCAACG GCAAACGTAT CGACACCCTG AAAGGGGACG CGCTGCGCCG CCTGCGGGGC AAGGAAATCG GTATGGTCTT TCAGGACCCA CTGACCTCCA TCAATCCGCT GTTGCGGATC GGGGATCAAC TGGTGGAGAC CATGCTGACC CACCTGCCGA TCAGCAAATC CGAGGCCGAA AAACGCGCCG TGGCCGCCCT AGAAGAAGTG GGCATTCCCG GTGCTGCGAA ACGTGTGAAC AGCTACCCGC ACGAGTTTTC CGGCGGTATG CGCCAGCGGG TGGTGATCGC CTTGGCGCTT TGTGCGGAGC CTTCGCTGGT CATCGCGGAT GAGCCGACAA CGGCGCTGGA TGTGTCTGTG CAGGCACAGA TCATCGCGTT GCTGAAACGG CTCTGTCGTG AGCGCGGCAC GGCTGTCATG CTGATCACGC ACGACATGGG CGTGATTGCC GAAGCAGCAG ATCGTGTGGC GGTGATGTAT GCCGGGCGCC TCGCAGAGCT CGGCCCGGTG CGCGATGTGA TCACCGCGCC TGAGCACCCC TATACGCATG GGCTGATGGC CTCGACACCA CTCGCGTCGC GTGGCCAGAA ACGTCTGCAC CAGATCCCCG GCGCAATGCC GCGTCTGGAT GCGGTGCCGG ATGGTTGCGC CTTCAACCCA CGCTGCCCGC ATGCGGCCGA CAAATGCCGC GCGGCCCCCG CACCCAAGGT CGACGGAGGT TCCGCCGCGT GCTGGTTCCC ACTTCAACAT GAGGAGGCCT CCTGA
|
Protein sequence | MADPVLSIRN LCVEIPTRHG ILKPVDGVSY DIAKGEILGI VGESGAGKSM AGNAVIGLLN PPAHVSSGEI WLNGKRIDTL KGDALRRLRG KEIGMVFQDP LTSINPLLRI GDQLVETMLT HLPISKSEAE KRAVAALEEV GIPGAAKRVN SYPHEFSGGM RQRVVIALAL CAEPSLVIAD EPTTALDVSV QAQIIALLKR LCRERGTAVM LITHDMGVIA EAADRVAVMY AGRLAELGPV RDVITAPEHP YTHGLMASTP LASRGQKRLH QIPGAMPRLD AVPDGCAFNP RCPHAADKCR AAPAPKVDGG SAACWFPLQH EEAS
|
| |