| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3136 |
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| Symbol | |
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| ID | 4075008 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | + |
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| Start bp | 112844 |
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| End bp | 114946 |
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| Gene Length | 2103 bp |
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| Protein Length | 700 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 638004639 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_611372 |
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| Protein GI | 99078114 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.882621 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGATCA AACGCAGAAT CCTTGGCCCT ATCATCCTGC TGATCGTGAT CGGCATCGTC
GGCGCTATCT GGGTGGCGCG TGCGGCGATC AAGACACAAG ACCTGATCCA GGACGCGGAC
TCCGCGGCGG TGCGCACCCT GCAGGCCACA GAGCGTGCAC AACGGATCCG AGCGGAGATC
GAGAGTCGCC TCAGCGAGTT TCTGGAATTC AACACCATCG CCCCGCCCGA CCGGATCAGG
CGCAATCATC AGCGGTATGT CGATGCGTTC CAGAACGTCT GGAACGACCT GCGCGCAGCG
CCAGGGTCCG AGGCCCAGAA ACGGATGGTG GCGCAGGTCG AAGAACAGTT CAAATCCTGG
AACACAGAAG CCTCGATTGC CCTCGGGTTG ATCTACGACA CCCATATTCC CTCGCGCAAC
CGGCTGGACA CTCTGGCAAG GCGATTGGAA CTGGCGCTGG TGGCGCTGGA GCAGGAGGTG
CGTCTGAGTG CGGAGCAGGT CAATCAGGAC GCACGGCGCC GCTATGCAAA ACAGGTGGTG
ATTGTTCTTG TCACCATGAT CGGGATCTTT CTTGTGGCGG GGTCTGCATT CATCGGCTTT
GGTGGTCAAC TGGTGCGGTC TCTGACCCAA CTCGCGGCCG CAATGGAGCG CATTCGTGCG
GGCGATTTCG ACACCCCACT GAGCGACCTG CAGCGCCGCG ACGAAGTGGG CAAGATTGCG
CGCGGGGTGG CGGATTTCTC ATCGACCTTG CGCGATCTCA GTGAGGCCAA AACCCACATC
GAGCATCTGG CGCTGCACGA TCAGTTGACC GATCTTCCCA ACCGACGTGC CCTACAGGAC
TATCTCGAAC GCTCTGTGGA GCAGGCGCGT GATTCAAACG CGCGCCACGC CGTGCTGCAT
GTCGATCTCG ACCGGTTCAA GCAGATCAAT GACCTGATGG GCCACGCAGC GGGCGACCAG
ATCCTGCTGC ATGCGGCCGA GGCCATGCAG CGCCAGATTG GGCCAGACGA TATGACGGCC
CGCGTCGGAG GAGACGAATT TGTTATTGTC CTGCGCGGCC ATGGTACTGA CTCGAAAACC
AAAGCGATTG CCAAACGGGT CATCGAGGAA ATTTCAAAAC CTGTCGAAAT CGAAGGCGAG
TTTGTAAATG TCGGCGCAAG CATCGGCATC GCTTATCTGG CAGCCGGAGA GACCGATCCG
GCGCGCATCC TCTCCAACGC CGATATTGCA CTCTATATCG CCAAGAGTGA GGGCCGCGGC
CGCGTGTCCT TTTACAATGA TGCCACCCGC GCGCGCTTTG AGGGCAATAT GGCGCTCCTG
CGCGATCTGC GCATTGGCCT GGACAATGGC GAAATCACCG CCTTTTTCCA GCCTCAGGTG
GATGGGATCA CCAACGAGGT GCTCGGCTTT GAGGCGCTTG CGCGCTGGCA TCACCCCAAG
CGCGGCATGC TCGATCCGGG CGTCTTTATC ACCTTGGCCT TTGAACACGG GCTGGGCGAC
CGGCTGACCG AGCGCATCGT ATCCGACGCG ATTTCCGCCT TGCTCGAATG GCGCGCCCTT
GGCCTGCCTG CGCCCAGCGT CAGCGTGAAT TTCTCCGCCA AGCAGCTGCG CGATGGGGGG
CTGGTGGAGT ACCTGGATGA TGCCTTGTTC GCGGCCAACC TGCAGCCGAA GGATATCGCC
ATCGAAGTCC TCGAGAGCGT GCTCTTCAGC GATGGAGTGG ACCCTGCCCT CAACACAATC
GCCAAGTTGC AGGACCGTGG CTACAAGATC GAACTTGATG ATTTTGGCAC TGGGCATGCC
TCGATCTCGA ACCTGCGACG GTTCAAGGTC GATGGCATCA AACTCGACAA GGATTTTGTG
GCCGGGGTCG ATCAGGACGC CGAACAGGAG GTCATCCTGC GCACCATGAT CGACCTCTGC
CGAAATCTCA ACATCGAGTG CCTTGCCGAA GGTGTTGAGA CCGAGGCAGA AATCGCCAAG
CTGATCTCGC TGGGCTGCAG CCGTTTCCAG GGCTACGGCA TCGCGCGCCC GATGGCGCGC
GACGCCGTCA CCAGCTGGCT CGAGACACAT TACGGGCGCA AGCCCGATGC CAAGGTAAGC
TGA
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| Protein sequence | MSIKRRILGP IILLIVIGIV GAIWVARAAI KTQDLIQDAD SAAVRTLQAT ERAQRIRAEI
ESRLSEFLEF NTIAPPDRIR RNHQRYVDAF QNVWNDLRAA PGSEAQKRMV AQVEEQFKSW
NTEASIALGL IYDTHIPSRN RLDTLARRLE LALVALEQEV RLSAEQVNQD ARRRYAKQVV
IVLVTMIGIF LVAGSAFIGF GGQLVRSLTQ LAAAMERIRA GDFDTPLSDL QRRDEVGKIA
RGVADFSSTL RDLSEAKTHI EHLALHDQLT DLPNRRALQD YLERSVEQAR DSNARHAVLH
VDLDRFKQIN DLMGHAAGDQ ILLHAAEAMQ RQIGPDDMTA RVGGDEFVIV LRGHGTDSKT
KAIAKRVIEE ISKPVEIEGE FVNVGASIGI AYLAAGETDP ARILSNADIA LYIAKSEGRG
RVSFYNDATR ARFEGNMALL RDLRIGLDNG EITAFFQPQV DGITNEVLGF EALARWHHPK
RGMLDPGVFI TLAFEHGLGD RLTERIVSDA ISALLEWRAL GLPAPSVSVN FSAKQLRDGG
LVEYLDDALF AANLQPKDIA IEVLESVLFS DGVDPALNTI AKLQDRGYKI ELDDFGTGHA
SISNLRRFKV DGIKLDKDFV AGVDQDAEQE VILRTMIDLC RNLNIECLAE GVETEAEIAK
LISLGCSRFQ GYGIARPMAR DAVTSWLETH YGRKPDAKVS
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