| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3129 |
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| Symbol | |
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| ID | 4075001 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | - |
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| Start bp | 103016 |
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| End bp | 104521 |
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| Gene Length | 1506 bp |
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| Protein Length | 501 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638004632 |
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| Product | TRAP C4-dicarboxylate transport system permease DctM subunit |
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| Protein accession | YP_611365 |
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| Protein GI | 99078107 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.717892 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGCGCGC TTGAAATCGG TATCTGGTCC TTTCCCGTCC TGATGGGGCT GATCTTTCTG
AGGGTGCCTA TTGGTTTGTC GATGTTCTTG GTGGGCCTTG GCGGTCTTGT GCTGGTCACG
GGGGACACGA TCGTCGCCTT TGGCCGTCTC AAGAATGAAA CCTACTCGAC CTTTTCCTCC
TATTCGCTGT CGATCATCCC GATGTTCTTC CTGATGGGGC AGTTTGCAAC GCTCGGAGGC
ATGTCGACCG CGCTGTTCAA GGCGGCGGAA GGCTTTATCG GGCATCGCAA AGGCGGTGTC
GCCATGGCCG CAATCGGGGC CTGTGCGGGC TTTGGCGCAA TCTGTGGATC GTCGCTGGCG
ACGGCAGCCA CCATGGGGCG CGTGGCGCTG CCTGAGTTGA AAAACTATGG CTATGCGAGC
GGGTTTTCGA CCGCAACCCT GGCGGCAGGT GGCACGTTGG GCATCCTGAT CCCGCCCTCG
GTGGTTTTGG TGATCTATGC CATCTTGACC GAACAGAATA TCGCAAAGCT CTTCTTGGCG
GCCTTTATCC CCGGTCTTTT GGCGGCCATC GGTTATGTCA TCGCAATCTC CGTCTATGTG
CGCCTCTTTC CCGAAAGCGC GGGCACCCGT GAGCCGATCC CGTGGCGCGA GCGTTTCTCG
CTCTTGTTTG CGGTCTGGCC CGTGCTCTTG GTATTTGGCC TCGTGGTGGG TGGCATCTAT
GCAGGCTGGT TCACCCCGAC CGAAGGGGCG GCCGTGGGTG CATTGGGCAC CGGGCTTATC
GCGCTTGCCA ATGGGGGGCT GACCCGCCAG ACGCTGACCG ACAGCTTCAT GATCACGGCA
CGGTCCACCG CGATGATCTT CTTCATCGTG CTGGGAGCGG GGTTCTACAA TGGCTTTCTC
GCACTCACGC AGGTGCCGCA GGAACTCGCG AACTTTGTGG TAGCACAAGG CCTGAGCCCT
TGGATGGTGC TTGCGCTTAT CCTCGTGTTC TATCTGCTTC TCGGCTGTCT GATGGACAGT
CTGTCGATGA TCCTGCTGAC AATCCCGATC TTCTATCCGG TGATCTCAGC GATGGACTTT
GGTCTTGTGT CGCTCCCGGC GATGCAGGCG GATGCTGCGA TGGAGGTTCT CCGGGCTGGG
GTTCCCGATG GCATGGGGCA GGAGATGCTT GCCTCCATCA AGGATGCGAT CGCCAACGGG
ACAGAACTGA CGCGAGAGCA GATGAAGGAA CTTGGCATTC GCGTGACCCA AGGCATCGCA
AACCGGCTCG AGACAGAATA TGTCGCGATC TGGTTTGGTA TCCTCACGCT GATCGTGGTC
GAAGTTGGCC TGATCACACC GCCGGTTGGC ATGAACCTCT TTGTGATCAA CGCGATGGAT
CCAAAGTCGC GCATGGTGGA CACCTACAAG GCGGTTCTGT TCTTCGTGGG CTCCGACCTG
ATCCGTGTGG TGATCCTGGT CTTGTTCCCG GTGATCACGC TCTTGCCTTT GATGCTGCTC
TACTGA
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| Protein sequence | MSALEIGIWS FPVLMGLIFL RVPIGLSMFL VGLGGLVLVT GDTIVAFGRL KNETYSTFSS
YSLSIIPMFF LMGQFATLGG MSTALFKAAE GFIGHRKGGV AMAAIGACAG FGAICGSSLA
TAATMGRVAL PELKNYGYAS GFSTATLAAG GTLGILIPPS VVLVIYAILT EQNIAKLFLA
AFIPGLLAAI GYVIAISVYV RLFPESAGTR EPIPWRERFS LLFAVWPVLL VFGLVVGGIY
AGWFTPTEGA AVGALGTGLI ALANGGLTRQ TLTDSFMITA RSTAMIFFIV LGAGFYNGFL
ALTQVPQELA NFVVAQGLSP WMVLALILVF YLLLGCLMDS LSMILLTIPI FYPVISAMDF
GLVSLPAMQA DAAMEVLRAG VPDGMGQEML ASIKDAIANG TELTREQMKE LGIRVTQGIA
NRLETEYVAI WFGILTLIVV EVGLITPPVG MNLFVINAMD PKSRMVDTYK AVLFFVGSDL
IRVVILVLFP VITLLPLMLL Y
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