Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_3115 |
Symbol | |
ID | 4074986 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008043 |
Strand | + |
Start bp | 86470 |
End bp | 88485 |
Gene Length | 2016 bp |
Protein Length | 671 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 638004617 |
Product | oligopeptide/dipeptide ABC transporter, ATP-binding protein-like |
Protein accession | YP_611351 |
Protein GI | 99078093 |
COG category | [E] Amino acid transport and metabolism [P] Inorganic ion transport and metabolism |
COG ID | [COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [COG4608] ABC-type oligopeptide transport system, ATPase component |
TIGRFAM ID | [TIGR02323] phosphonate C-P lyase system protein PhnK |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.426861 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGCCCC TACTTGAAGT TCAAGACCTG TCGGTGACCC TGAAACTGGC CGAAGGTGAA ATGACCGCCG TACGCGATGT TTCTTTCACG GTGAACCGCG GCGAAACGCT TGGCATCGTC GGCGAATCCG GCTCAGGCAA ATCGGTGTCA TCCATGGCAA TAATGGGGCT ACTGCCGGAG GGCACACGCA CCCAAGCTGC GTGCCTGAGG TTTGATGACA CGGATCTTTT GACCGCGTCC GAGAAGCAGA TGTCCAGGCT GCGCGGCAAC AAGATTGCAA TGATCTTTCA GGAGCCGATG ACGTCGCTGA ACCCGGTCTA CACTATCGGG CGGCAGATGA CCGAGCTGAT GCAGCATCAC AAGAATGTAT CTAAGGCCGA GGCCCGCGCC CGTGCGATTG AGCTCTTGGA AAAGGTCGGG ATCACCGCCG CCGCCAGCCG CTTGTCGCAA TATCCGCACC AGCTGTCCGG CGGGCTGCGC CAGCGGGTCA TGATCGCGAT GATGCTGATG AACGATCCGG ACCTGATCAT CGCTGATGAA CCCACCACCG CTTTGGACGT GACCATTCAG GCGCAGATCC TCAACCTGCT CAAGGACCTG CAAAAAGAGT TGAACATAGC GCTTGTCATC ATCTCGCATG ACATGGGGGT TGTGGCCCGC GTATCGGACA AGATTGCGGT GATGTATGCC GGTCAGGTGA TCGAAACCGG GACGGTGACG AATGTGCTGC AAAATCCCGT TCATCCCTAT ACCCAAGGCT TGCTGGAGAG CATTCCGATC CCCGGCCAGA TCGAACCGGG CGGTCAGTTG GGGTCTATCC CCGGTCTGGT TCCATCGTTG AAAACACGGT TCAAGGGCTG TCGCTTTGCC AATCGCTGCA CACGTGTTCA GGACGCCTGC ATAGACCAGA GTGTCGCTTT GCGGGACGCG CCAACAGGTC AGGCCTATCG CTGCATTCTA CCGTTTGAGG ACCTTATGGC CCCGGCCGCG CCAGAGAGCT ATGAGGCGGC TGGCTCTGGT CATGTCTATG GCTCCCGGAT CGACAAGGAA GCAACGCCCC TGCTGTCTGC CGATGCGGCT GAATGTGTGT TTCAGGTCAG TCAGGATATG TTCTCTGCTC CCAAACCACT GAAAGCTGTC GACAACCTGT CCCTGGAGCT TAGCAAAGGC GAAGTTGTGG CCGTTGTCGG TGAATCCGGC TGCGGCAAGT CCACTTTGGC GCGCATGCTT TTGGGGCTTC AATCCCCCAC CAATGGTAAG GTCACGTTGG ATGGGCGCGA CATTTCGGCC ATGTCAAATG CCGAGCGATC GCGAAAAGTC CAGTCGATCT TTCAGGACCC GTATTCGTCG CTCAACCCCC GCCGGACGAT TGGCGAGATC ATCCGCCGTC CGATGGCGTT GCACGGTATG GGCAGCGCAA GCGAGCAGCA AAAAGTGGTC GAAGAGATCA TGGAGCTAGT CGGCCTGCCG CGGAACTTTT ATCACAACTA TCCCAACCAG CTTTCTGGCG GGCAACGTCA GCGTGTCGCC ATTGCGCGTG CACTGGTCCT GAAACCCGAG ATTGTCGTCT GCGACGAACC GACCTCGGCG CTGGATGTCT CGGTTCAGGC CCAAATCCTG AACCTGCTGC TGGAATTGCG CCGGGAGATG CGGCTCACCT ATCTGCTCAT CACGCATGAT ATGGCGGTGG TCGAACATAT AGCAACCCGT GTGATCGTCA TGTATCTGGG CCGGGTGGTC GAGATCGCCG ACGCGCGCTC GATCTTCAAA TCCCCCAAAC ACCCCTACAC CAAGGCGCTG CTCAAGTCCG TGTTGACCCC CGATCCCGGT GCCGGTGTGC CGAGCATCGA GTTGGGCTCC TCCTATCCCA ACCCGATCAA CCCGCCCAGC GGTTGCACGT TCCACCCCAG GTGCGAGTTC GCGGAGGATA TCTGCAAAGC CAAGGCGCCT TTGCTTGAAC ATCTCACCGG CCAGCAAAGC TGCGCCTGTC ACATGGTGGC GAGGGAAGTG GTATGA
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Protein sequence | MQPLLEVQDL SVTLKLAEGE MTAVRDVSFT VNRGETLGIV GESGSGKSVS SMAIMGLLPE GTRTQAACLR FDDTDLLTAS EKQMSRLRGN KIAMIFQEPM TSLNPVYTIG RQMTELMQHH KNVSKAEARA RAIELLEKVG ITAAASRLSQ YPHQLSGGLR QRVMIAMMLM NDPDLIIADE PTTALDVTIQ AQILNLLKDL QKELNIALVI ISHDMGVVAR VSDKIAVMYA GQVIETGTVT NVLQNPVHPY TQGLLESIPI PGQIEPGGQL GSIPGLVPSL KTRFKGCRFA NRCTRVQDAC IDQSVALRDA PTGQAYRCIL PFEDLMAPAA PESYEAAGSG HVYGSRIDKE ATPLLSADAA ECVFQVSQDM FSAPKPLKAV DNLSLELSKG EVVAVVGESG CGKSTLARML LGLQSPTNGK VTLDGRDISA MSNAERSRKV QSIFQDPYSS LNPRRTIGEI IRRPMALHGM GSASEQQKVV EEIMELVGLP RNFYHNYPNQ LSGGQRQRVA IARALVLKPE IVVCDEPTSA LDVSVQAQIL NLLLELRREM RLTYLLITHD MAVVEHIATR VIVMYLGRVV EIADARSIFK SPKHPYTKAL LKSVLTPDPG AGVPSIELGS SYPNPINPPS GCTFHPRCEF AEDICKAKAP LLEHLTGQQS CACHMVAREV V
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