| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3112 |
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| Symbol | |
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| ID | 4075559 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | + |
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| Start bp | 83029 |
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| End bp | 84546 |
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| Gene Length | 1518 bp |
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| Protein Length | 505 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 638004614 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_611348 |
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| Protein GI | 99078090 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.817588 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGTCA GATCCATGCT GCTTGCCTCA GCGCTGGCGC TTTCCTCCGC GCTTCCCAGT
TTTGCCGACA AGGCGAATGA CACGCTGGTC GCAGCTTTCA ACAAGGAAGT TCAGACGCTT
GACGGTCTCT ACTCAACGTC GCGCGAGAAC CTGATCCTGT CCTATCTGAC CTCGGATCAG
CTGGTCGAGC TGAACCTCGA CACCGGAGAG TATGAAGGGG CACTAGCGGA AAGCTATACT
TGGGTCGATG ATCGCACCAT CGATTTCACA CTCCGCGAAG GCCTGACATT CCATGACGGT
TCGCCTGTAA TGGTCGAAGA CATCGTCTAT TCCTTTGACT GGATCGCCAA TGCGGACTCC
AAGACCAAAC GCGGCGCCTT TATCCGTGGT TGGTTCGAGA GCGCTGTCGC GATTGATGAT
CGCACAGTGC GCGTCACCGC CAAACAACCC TATCCTTTGA TGCTGCGTGA CATCGCCGTC
TTCGTTCTCA CTCGCAAGGC AGGCAGCTAT GGCGATGGCA ACCCTGATGC GCTGACGCAG
AACTTCGTCG GCACCGGCCC TTACAAGATT TCTGAATTTG CCATGGGCGC CGGTGTGCAG
CTGGAGCGCT ATGATGGATA CTACACTGGC GGACCCAAGG CGGCCGGTTC GATTGAGAAA
ATCGTCCTGC GCCCGATTCC CGACTGGGGC ACCGTGACGG CGGAATTGCT GTCGGGGGGC
GTAAACTGGT CTTTCAACGT GCCTGACGAT ACGGCCAAAG ATCTGGGCGG ATTGCCCATG
GTGGATCATG TATCCGGCGT GTCCACGCGC GTTGCCTTCC TGGTGCTGGA CGCCGCAGGT
GTCAGCGATG CGGAAGGCCC AATGACCAAC AAGCTGGTGC GTCAGGCGCT CAACCATGCG
GTAAACCGGA AAGAAATCGT TGAATTTCTC GTCGGCGGTT CGGGCCGCGT TGTTCACTCG
ACCTGTAACG CGGGCATGTT CGGCTGTGAT GTCGAGATCA CGGAATACGA TTATGACCCC
GAAAAGGCCA AGGCTTTGCT GGCTGAAGCG GGCTACCCGG ACGGCTTTGA GTTCGACCTG
ACCGCCTATC GCGAACGCCC CATCATGGAA GCAGTTGCCG CGGATCTGGC CGAAATCGGC
GTGATCGCGA ATATCAACTT CGTAAAGCTT TCCGCGTTGT CCAAATCCCG CGCCGAAGGT
CAGCTTGAAG CATTCCAGAA CGCCTGGGGC TTTTATGCGA CGCCGGATCT GGGCGCGATT
TCCAACTACT ATGTCGAAGG ATCCAACCGC AACCTACACC AAGACGCAGA GGTTCAAGGT
TGGTTCAAGG CTGCGCTGGA AACTGTCGAT CAAGACGAGC GCGCAGATCT CTATGCGAAG
GCCCTGCAGA AGATCGCCGA TGAGGCTTAC CTGCTTCCGA TCTTCCAGTA TTCGCAAAAC
TACGTGAAGA GCGTGGATGT GAATTTTGCG GCACCGGCCG ACGGCCTGCC ACGGCTCAAT
GAGCTGAGCT GGAAGTAA
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| Protein sequence | MSVRSMLLAS ALALSSALPS FADKANDTLV AAFNKEVQTL DGLYSTSREN LILSYLTSDQ
LVELNLDTGE YEGALAESYT WVDDRTIDFT LREGLTFHDG SPVMVEDIVY SFDWIANADS
KTKRGAFIRG WFESAVAIDD RTVRVTAKQP YPLMLRDIAV FVLTRKAGSY GDGNPDALTQ
NFVGTGPYKI SEFAMGAGVQ LERYDGYYTG GPKAAGSIEK IVLRPIPDWG TVTAELLSGG
VNWSFNVPDD TAKDLGGLPM VDHVSGVSTR VAFLVLDAAG VSDAEGPMTN KLVRQALNHA
VNRKEIVEFL VGGSGRVVHS TCNAGMFGCD VEITEYDYDP EKAKALLAEA GYPDGFEFDL
TAYRERPIME AVAADLAEIG VIANINFVKL SALSKSRAEG QLEAFQNAWG FYATPDLGAI
SNYYVEGSNR NLHQDAEVQG WFKAALETVD QDERADLYAK ALQKIADEAY LLPIFQYSQN
YVKSVDVNFA APADGLPRLN ELSWK
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