| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3089 |
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| Symbol | |
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| ID | 4075536 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | + |
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| Start bp | 57652 |
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| End bp | 59874 |
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| Gene Length | 2223 bp |
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| Protein Length | 740 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 638004591 |
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| Product | multi-sensor signal transduction histidine kinase |
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| Protein accession | YP_611325 |
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| Protein GI | 99078067 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.552133 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATTCGT CGCTTGCCAG TTTTTTTGCC CGAACCCCCG CCGCTACATT GGACAGCTGC
GACAGTGAAC CGATTCATCT TTCTGGTTTA ATTCAAAATA CCGGCGCGCT GATCGTACAG
GACCCGGAAA CTGGTTTGAT AATAGGGGCC TCGGAGAATG CGCATCTCTT TCTGGGGCGA
CCGGTCGAGG CCATATTGGG CTTTAGCCTG ACGGAAATCG CGCCGGACAT TGCAGACGAG
CTGGCCGAGC CGGACAATGG CCAAAACATT GTCCATGAGA TCCTGGAAAG CCAACGCAAT
GTGGACGATT GCGTATATGA CACCATCTGC CATGTGCATG ATGGGCGGCG GGTCATCGAA
TTTGTCCTGA ACGAAGCCCC ATCCGCGTCG CAAGCGCGCA AACGCATGCG TATGAGCGGA
CCAGCATGCG CGCAGATCAT GGCGGCCCCC ACATTCGACG CAGCAATGCA GATCGCCTGC
AATACAGTGC GCACGCTGAC GGGGTTTTCC CGGGTAAAGA TATATCGCTT TCTTCCGGAT
TGGTCGGGGG AAACCATCGC CGAGAGCAAT GACGGCAGCC TACCGAGTTA TTTGGGCATG
CACTTTCCCA GCGGAGATAT TCCAAAACAG GTCCGCGCCT TGATGGAAAT TGTCCCCTTT
CGTTTTGTGG GGCGCGTGGA TGACGACAAT ATCGCCATTC GCGCGCTCAC CTCCGGTGCT
GGGGACATTG ATCTGACCTG GGCAATGAAC CGCTCTGTGT CGGCCATGCA CACCGCCTAT
TTGCGCAACA TTGGCGCAGG AAGCTCGTTT TCCTGCAGCC TGATGGACAA AGGCAAGCTC
TGGGGCCTGA TCGCCTGCCA CAGCGGAGGG TCGATGGTGG TGCCCGCCGA CAGCTGGAGC
CTGGTGCAGG AAATTGGCAC GGCCCTGATG CTGAAGTTCG ACCAGACCGA GCGTATGGCC
ACCGCTGACA TGATCAGCCG CCTGCGCCGG ATCGAGAATG AATTTGCCGC GGAAATGCGG
CGCACAGGCG ATGTAGAAGA TGTGATCAAG ACGCTGGTCC CGATCCTGCA GAAGTTCCTT
CGCGCGGATG GTTTTGCCTT TCAGTTCGGC ACCAATATGC ACACCTCAGG AGAGGTCCCC
CCCGAGAATT TCATTCGCAA GCTTGTGCAA TGGAGCAAGA CCAATATGGA GGATGTGGAT
CAGTTCCAGA CCGCGTCCCT CCATGCTGAT TTGCCCGAAG CAAAGCATCA CATCGACACC
GCCTGTGGCG TCCTTGTGCA GCCGATTGTC ATGCACCGGG TCTGTCAACT CTTGTGGTTT
CGGGGGCCGA TCACACGGCG GGTCGCATGG GCTGGACGCC CCGACGCGCA GGCCAAGATC
GACCCGAAAA CGGGCGTCAC CCTGGGGCCA CGACAGTCGT TTGACAAATG GGTCGAAGAA
CACCGCGATC AAAGCCTGCC CTGGGAAGAG GCCGAACTGG AAGCCGCACG CGAGATCTTC
AAGGAGTTTC TCGACATCAT CACCTCGCAG CTCCTGCTGA AGGAAGAGAA CTCCTCCCTG
CGCAAATTTG CCCATACGGC AGCACATGAC ATCAAAGGCT CCTTGCGGGG GATCAGCGCC
GCGCTTGGCT GGATGGAAGA GGATGATTTT GAAAAAACCA CAACGCGAGA GCATCAGGAA
CTCGCACTGG CGCAGGCCAG GAAGCTGCAA AACCTGACCG AGAGTCTGCT GGAGATGACT
CTGCTGCGCG AGCAGCCGAC AGCAAAGTTC AGCAAGACAG ACCTCAAGAA ACTGGCCGAA
GATACAAAGC TGCTGATCAA ATATGACCTC GAACAGGCGG GGGGGCAGAT CAACGTCGGG
GCATTGCCAG ACTGTACCGT CGCGTCTGAT CTCATCACAC GTCTGCTGCT CAACCTCTGT
GGAAACGCAA TCAAATACGC AAAATCGGAT CAGCCTTTGC AAATCGACAT CACGGGCGAG
GTGCTCGATG GCGAGATGAA CCGGCTGATC GTGACCGACA ACGGCCCCGG GATCGAGTCC
AAACATGCGG AAAAGATATT TGAGCAGGCC ACGCGCCTTC ACGATGGTGG CGAGGGCTGT
GGATTTGGTC TGGCGATCTG CACCGAAATC GCCAAGAGCC ACCACGGGCA GATCTATCTG
GACACCAGCT ATAGCGACGG CGCGCGTTTC GTCTTTGAAT GGCCCTGCGA GGATCCAACC
TGA
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| Protein sequence | MNSSLASFFA RTPAATLDSC DSEPIHLSGL IQNTGALIVQ DPETGLIIGA SENAHLFLGR
PVEAILGFSL TEIAPDIADE LAEPDNGQNI VHEILESQRN VDDCVYDTIC HVHDGRRVIE
FVLNEAPSAS QARKRMRMSG PACAQIMAAP TFDAAMQIAC NTVRTLTGFS RVKIYRFLPD
WSGETIAESN DGSLPSYLGM HFPSGDIPKQ VRALMEIVPF RFVGRVDDDN IAIRALTSGA
GDIDLTWAMN RSVSAMHTAY LRNIGAGSSF SCSLMDKGKL WGLIACHSGG SMVVPADSWS
LVQEIGTALM LKFDQTERMA TADMISRLRR IENEFAAEMR RTGDVEDVIK TLVPILQKFL
RADGFAFQFG TNMHTSGEVP PENFIRKLVQ WSKTNMEDVD QFQTASLHAD LPEAKHHIDT
ACGVLVQPIV MHRVCQLLWF RGPITRRVAW AGRPDAQAKI DPKTGVTLGP RQSFDKWVEE
HRDQSLPWEE AELEAAREIF KEFLDIITSQ LLLKEENSSL RKFAHTAAHD IKGSLRGISA
ALGWMEEDDF EKTTTREHQE LALAQARKLQ NLTESLLEMT LLREQPTAKF SKTDLKKLAE
DTKLLIKYDL EQAGGQINVG ALPDCTVASD LITRLLLNLC GNAIKYAKSD QPLQIDITGE
VLDGEMNRLI VTDNGPGIES KHAEKIFEQA TRLHDGGEGC GFGLAICTEI AKSHHGQIYL
DTSYSDGARF VFEWPCEDPT
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