| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3079 |
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| Symbol | |
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| ID | 4075525 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | - |
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| Start bp | 47450 |
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| End bp | 48190 |
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| Gene Length | 741 bp |
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| Protein Length | 246 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 638004580 |
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| Product | 16S ribosomal RNA methyltransferase RsmE |
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| Protein accession | YP_611315 |
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| Protein GI | 99078057 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1385] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR00046] RNA methyltransferase, RsmE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.816692 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGTGCTA AAGTCAGACT GTATGTAGAT CACCCCTTGG GGGCAGGGCA AACGGTTCCT
CTGGACCGCG ATCAGGCGCA TTATCTCTTT GGGGTGATGC GGCTCTCCGT GGCCGCGCGG
GTTGCGCTTT TTAACGGGCG CGACGGGGAA TGGCAGGCCG AGGTGGCCGA GGCCGGCAAG
CGCGGGGGCG TGCTCGCCTG CCTTGAGCAA TCAAAGCCCC TGCAGTTGCC GCCCGACCTG
TGGTTGATCT TTGCGCCGAT CAAGAAGGCG CGGACCGATT TCATCGTCGA AAAAGCTGCC
GAGATGGGCG CCGCGCGAAT CTTGCCGGTG GCGACAGAGT TCACCAATTC CGAGCGCATC
CGACAGGACC GTCTACAGGC CCATGCCGTC GAGGCTGCCG AGCAATGCGG CGGCACCTAT
GTGCCCGAGG TGGCAGAGCT GCAAAAACTC CCGTCGTTGT TGGACCATTG GCCCGCAGAG
CGTCAGTTGA TGTTCTGTGA CGAGGCCGAG ATCGGCCAGC GGTTGTTTCT GGATGTGGCC
CAGGTGGAGG GCTCCGCTGG CGCGGCCGGG CCCTGGGCGA TTCTGATCGG GCCGGAGGGC
GGGTTTTCCG ATGCGGAGCG CAAGCGCCTC CATGCAATGC CACAGGCCCA TGTGGTCAGT
CTGGGGCCAC GGATCCTGCG TGCGGATACT GCGGCTGTGG CCGCACTGAC GCTTTGGCAG
CAGCGGTTGG GAGACTGGTA A
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| Protein sequence | MSAKVRLYVD HPLGAGQTVP LDRDQAHYLF GVMRLSVAAR VALFNGRDGE WQAEVAEAGK
RGGVLACLEQ SKPLQLPPDL WLIFAPIKKA RTDFIVEKAA EMGAARILPV ATEFTNSERI
RQDRLQAHAV EAAEQCGGTY VPEVAELQKL PSLLDHWPAE RQLMFCDEAE IGQRLFLDVA
QVEGSAGAAG PWAILIGPEG GFSDAERKRL HAMPQAHVVS LGPRILRADT AAVAALTLWQ
QRLGDW
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