Gene TM1040_3065 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_3065 
Symbol 
ID4075159 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008043 
Strand
Start bp32428 
End bp33891 
Gene Length1464 bp 
Protein Length487 aa 
Translation table11 
GC content65% 
IMG OID638004566 
Productsecretion protein HlyD 
Protein accessionYP_611301 
Protein GI99078043 
COG category[V] Defense mechanisms 
COG ID[COG1566] Multidrug resistance efflux pump 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.757879 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGATTTC TGCGACACAG CGTCATGGGG CTGTTTCTAG CGGGGCTGAC AGCTGCGCTC 
TTGCTCTTTG CCCTGCATCT GGTTCGCTCC GCCGTACAGG AGAGCCTCGC TGAAGAACGT
CGCGCCCCGC CCGCCCGCGA GCGGATCTTT GCCGTCAATG TGGTGACGGC AACTCTGGGC
GAGGAACGTC CCGAACTGGT GGGCTTTGGC CATGTCGAGA GCCGCCGCAC GCTCGAGCTG
CGCGCTGCCG TGTCCGGACG GGTCATCGCG CTTGCGGACG GGTTCCAGGA CGGTGGCCGC
GTGACCGCTG GTGATACACT GGTCGAGATC GACAAGGCCG ACGCCGAGGC CGCATTGGCC
CGTGCCAAAG CGGACATGAT GGACGCCGAA GCCGAGCGCC GCGACGCTGG CCGCGCGCTG
GATTTGGCCC GTGACGAGCT TGAAACCGCA CAGATGCAGG CCGATCTTCA AGAACGGGCG
TATCAGCGGC AGGTTGACCT CAAGACCCGT GGGGTGGGCA CCGAGGCCGC TGTGGAGGCC
GCCGAGCTGA CCGCCACAAG CGCGCGCCAG TCGGTGATCA CCCGCCGCCA GGCCGTCAGT
CAGGGCGAAG CCCGTATCGA TCAGGCCCAA ACCCTTGTGG CTCGGGCACA AATCGCACTG
GACGAGGCAC AGCGTGATCT CGAGGACACC ACGCTCACCG CGCCTTTCAC AGGCACGCTT
CAATCCGTCA ACCTTGTCGA GGGGCGGCTG GTCTCTGCCA ATGAAATCCT TGCTGAACTG
GTCGATCCCA ACCAGCTCGA GGTCGCCTTT CGTGTCTCCA CGGCCCAGTA TGCGCGTCTG
CTCGACGATG ACGGTCGCCT GATCCCGGCG GAGGTCATCG TCACGCTCGA CGCTGCCGGG
GCCGACATCC GCGCCACAGG TCGCCTGGCG CGCGCCAGCG GCGCTGTGGG GGATGGCCAG
TCGGGGCGTC TCATCTATGC GCGGGTAGAG GACAACGCAG GCTTCAAGCC CGGTGATTTC
GTCACCGTAC GCGTGCAAGA GCCTGCCATT GCCGATCTGA TCCGCTTGCC CGCCTCGGCG
ATGGACTCGC GCCAGACCGT TTTGGTTCTG GGCGAGGACG ACAGGCTTCA GGAGGTTCCG
GTGGAACTGG TGCGCCGCCA GGGCGACGAA ATCCTGCTGC GCGCATCTGA GCTGGAGGGG
CGTCAGGTTG TCACCGGTCG CACGCCGCTT CTTGGCGCCG GCATCAAGGT TCGCCCGCTG
ACCAAAGGCG CAGAGAACGC GCTGAAAGCG GCCGACCCGG ATCTGATCGA ACTCACCGAA
GAACGCCGCG CCACCCTGAA GGCCATCGTC AGCGACAACG GCCAAATGCC CAGCGAGGTA
AAAACCAGGG TCCTAGCCGA GTTGGACCAG CCCAAAGTCC CCGCAGCGCT CATCAGCCGT
ATCGAAGACA ATCGCGGCGG CTGA
 
Protein sequence
MRFLRHSVMG LFLAGLTAAL LLFALHLVRS AVQESLAEER RAPPARERIF AVNVVTATLG 
EERPELVGFG HVESRRTLEL RAAVSGRVIA LADGFQDGGR VTAGDTLVEI DKADAEAALA
RAKADMMDAE AERRDAGRAL DLARDELETA QMQADLQERA YQRQVDLKTR GVGTEAAVEA
AELTATSARQ SVITRRQAVS QGEARIDQAQ TLVARAQIAL DEAQRDLEDT TLTAPFTGTL
QSVNLVEGRL VSANEILAEL VDPNQLEVAF RVSTAQYARL LDDDGRLIPA EVIVTLDAAG
ADIRATGRLA RASGAVGDGQ SGRLIYARVE DNAGFKPGDF VTVRVQEPAI ADLIRLPASA
MDSRQTVLVL GEDDRLQEVP VELVRRQGDE ILLRASELEG RQVVTGRTPL LGAGIKVRPL
TKGAENALKA ADPDLIELTE ERRATLKAIV SDNGQMPSEV KTRVLAELDQ PKVPAALISR
IEDNRGG