Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_3065 |
Symbol | |
ID | 4075159 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008043 |
Strand | + |
Start bp | 32428 |
End bp | 33891 |
Gene Length | 1464 bp |
Protein Length | 487 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 638004566 |
Product | secretion protein HlyD |
Protein accession | YP_611301 |
Protein GI | 99078043 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.757879 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGATTTC TGCGACACAG CGTCATGGGG CTGTTTCTAG CGGGGCTGAC AGCTGCGCTC TTGCTCTTTG CCCTGCATCT GGTTCGCTCC GCCGTACAGG AGAGCCTCGC TGAAGAACGT CGCGCCCCGC CCGCCCGCGA GCGGATCTTT GCCGTCAATG TGGTGACGGC AACTCTGGGC GAGGAACGTC CCGAACTGGT GGGCTTTGGC CATGTCGAGA GCCGCCGCAC GCTCGAGCTG CGCGCTGCCG TGTCCGGACG GGTCATCGCG CTTGCGGACG GGTTCCAGGA CGGTGGCCGC GTGACCGCTG GTGATACACT GGTCGAGATC GACAAGGCCG ACGCCGAGGC CGCATTGGCC CGTGCCAAAG CGGACATGAT GGACGCCGAA GCCGAGCGCC GCGACGCTGG CCGCGCGCTG GATTTGGCCC GTGACGAGCT TGAAACCGCA CAGATGCAGG CCGATCTTCA AGAACGGGCG TATCAGCGGC AGGTTGACCT CAAGACCCGT GGGGTGGGCA CCGAGGCCGC TGTGGAGGCC GCCGAGCTGA CCGCCACAAG CGCGCGCCAG TCGGTGATCA CCCGCCGCCA GGCCGTCAGT CAGGGCGAAG CCCGTATCGA TCAGGCCCAA ACCCTTGTGG CTCGGGCACA AATCGCACTG GACGAGGCAC AGCGTGATCT CGAGGACACC ACGCTCACCG CGCCTTTCAC AGGCACGCTT CAATCCGTCA ACCTTGTCGA GGGGCGGCTG GTCTCTGCCA ATGAAATCCT TGCTGAACTG GTCGATCCCA ACCAGCTCGA GGTCGCCTTT CGTGTCTCCA CGGCCCAGTA TGCGCGTCTG CTCGACGATG ACGGTCGCCT GATCCCGGCG GAGGTCATCG TCACGCTCGA CGCTGCCGGG GCCGACATCC GCGCCACAGG TCGCCTGGCG CGCGCCAGCG GCGCTGTGGG GGATGGCCAG TCGGGGCGTC TCATCTATGC GCGGGTAGAG GACAACGCAG GCTTCAAGCC CGGTGATTTC GTCACCGTAC GCGTGCAAGA GCCTGCCATT GCCGATCTGA TCCGCTTGCC CGCCTCGGCG ATGGACTCGC GCCAGACCGT TTTGGTTCTG GGCGAGGACG ACAGGCTTCA GGAGGTTCCG GTGGAACTGG TGCGCCGCCA GGGCGACGAA ATCCTGCTGC GCGCATCTGA GCTGGAGGGG CGTCAGGTTG TCACCGGTCG CACGCCGCTT CTTGGCGCCG GCATCAAGGT TCGCCCGCTG ACCAAAGGCG CAGAGAACGC GCTGAAAGCG GCCGACCCGG ATCTGATCGA ACTCACCGAA GAACGCCGCG CCACCCTGAA GGCCATCGTC AGCGACAACG GCCAAATGCC CAGCGAGGTA AAAACCAGGG TCCTAGCCGA GTTGGACCAG CCCAAAGTCC CCGCAGCGCT CATCAGCCGT ATCGAAGACA ATCGCGGCGG CTGA
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Protein sequence | MRFLRHSVMG LFLAGLTAAL LLFALHLVRS AVQESLAEER RAPPARERIF AVNVVTATLG EERPELVGFG HVESRRTLEL RAAVSGRVIA LADGFQDGGR VTAGDTLVEI DKADAEAALA RAKADMMDAE AERRDAGRAL DLARDELETA QMQADLQERA YQRQVDLKTR GVGTEAAVEA AELTATSARQ SVITRRQAVS QGEARIDQAQ TLVARAQIAL DEAQRDLEDT TLTAPFTGTL QSVNLVEGRL VSANEILAEL VDPNQLEVAF RVSTAQYARL LDDDGRLIPA EVIVTLDAAG ADIRATGRLA RASGAVGDGQ SGRLIYARVE DNAGFKPGDF VTVRVQEPAI ADLIRLPASA MDSRQTVLVL GEDDRLQEVP VELVRRQGDE ILLRASELEG RQVVTGRTPL LGAGIKVRPL TKGAENALKA ADPDLIELTE ERRATLKAIV SDNGQMPSEV KTRVLAELDQ PKVPAALISR IEDNRGG
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