| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3063 |
|---|
| Symbol | |
|---|
| ID | 4075157 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008043 |
|---|
| Strand | + |
|---|
| Start bp | 31142 |
|---|
| End bp | 31765 |
|---|
| Gene Length | 624 bp |
|---|
| Protein Length | 207 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 638004564 |
|---|
| Product | lysine exporter protein LysE/YggA |
|---|
| Protein accession | YP_611299 |
|---|
| Protein GI | 99078041 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1280] Putative threonine efflux protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.657722 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGCGC TCTCGACCCT TGCGGCCTTT GTGCCCGCCG CGCTTGCGCT CAATATCACG
CCCGGCGCGG ATATGATGTT CTGTCTTGGT CAGGGACTCA AATCCGGGGC GCGCCCCGCC
ATCGCCGCCA GTTTCGGCGT CGCCGCAGGA GGCATGGTGC ATGTCGCGCT TGCCGGTCTT
GGTGTGGCCG CCGTGGTCGC CGCGCAACCG GCCTTGTTTG ATCTCATTCG CTGGCTTGGG
GTTGCGTATC TTCTGTATCT CGCATGGGGC GCCCTCATGC GACCCGGAGG GGCACAGCCC
ACAGGCCAGC CCGCACAGGC CGCGCGCGCC TTTCGCGCCG GGCTGATGGT CAGCCTCACC
AACCCCAAGG TGATCCTGTT TGTTCTCGCC TTCGTGCCGC AGTTCATCCG CCCTGAGGCG
GGCTCGGTTC TGGGACAGTT CCTGGTCTTT GGTGCCATCA TCGGGATCGG CGGTGTTTTT
GTGAATGGCG GAGTTGGCGT CTTTGCCGGG CGCGCGCGCA CCCTGTTTGC CGAGGACGGA
AGCGCCGCAC GGTGGATGCG CCGCATCACG GGTGGAATTT TTGCAGGCCT TGCACTGAGG
CTTGCGCTAC TAGAAAGGGC CTGA
|
|---|
| Protein sequence | MIALSTLAAF VPAALALNIT PGADMMFCLG QGLKSGARPA IAASFGVAAG GMVHVALAGL
GVAAVVAAQP ALFDLIRWLG VAYLLYLAWG ALMRPGGAQP TGQPAQAARA FRAGLMVSLT
NPKVILFVLA FVPQFIRPEA GSVLGQFLVF GAIIGIGGVF VNGGVGVFAG RARTLFAEDG
SAARWMRRIT GGIFAGLALR LALLERA
|
|---|
| |