| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3041 |
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| Symbol | |
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| ID | 4075135 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | + |
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| Start bp | 8058 |
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| End bp | 11189 |
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| Gene Length | 3132 bp |
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| Protein Length | 1043 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638004542 |
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| Product | hemolysin-type calcium-binding region |
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| Protein accession | YP_611277 |
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| Protein GI | 99078019 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG2931] RTX toxins and related Ca2+-binding proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCGCA TCAACCGTCC GGCTGCTGAC GCCGAAGAAT TCTTGCTCCA CTCTGAGGTT
GAGAATGAGC ACGATTGGCG TGCGCTCCCC GAGACATTCG ATGTTGATGA CTTTGCCCCT
TGGGAAGAGG AGTGGGATCT CGAAGAGGAG GAAGAGGAAG AAGAAGACCC AGAGCACATT
GACAACTCTC AGTTCTTCCA AACCGATGGG TCCGGCAACG AGGGCCTTAT TGACAACCTG
TTGAAACTCA CTGGCAGGGA CAACGCCGCA GCCAATGCCA ATGGCAACGC AAACGGGCTG
TTCAAATTGG TGCTGGGCGG CGATGGTGAC GACAGCCTGA CCGGATCCCG GGACGATGAC
GTCGTGATGG GCGGGCGTGG TCACGACAGC GTCGAGGGCG GCGAGGGCAA CGATACGCTC
ATGGGCGATG AGGACGGCCA GACCGGTTCG GACGCGACGC CGCTCGTGCT CAACATCAAC
AATCTCGTCA GCCAGTCCTA TTACGATGGC GCATCTGCCG GGATCGGAGA TACCGCAGTT
TACCGTGATG TGGCCTTTCT TGAGGATGGG ACCGCAGTCT GGGGACGCCT TGTTCTGGTG
AACGCAAGCG ACCCGAACAT GACCATCGAC CTGTCGGGCG ACCGTGGGGC TGAAATCTCC
ATCACCGGCA ACGGCTATGG GGACACCGCC GAGTTCCGGC TCGAGTTTTT TGATCCCACG
ACCGGCGAGC CGGTCAACAT CAACTCCACC GCGACTTTCA ACGACCTCGA TCAGAACTAC
TACAACTATG ATGTCGAGGC CGTTTCGCTG GATACGGATG AATACACCGC CTTTGGCACC
TCGGATGGTA CCTCGCTCAA TGTAACAAAT CAGGATGGCA GCGTGCGCGC GGCCGGGACC
GAGGCGAACA ACCCGGATGA CCAGGACGCC TGGTTCTCTG CCGAATTCGA AGGCCGGGAT
TTTATTACCT TCACCCTGGA AGCGCGCAGC ACGATCTCCG GGTTCACACT CTCGGGCGAC
CTCATCGAAG ATGGAGTCTA CGTCCCGATC GAGCAAGGCA ACGATACGCT GCTGGGCGGG
CTTGGGTCGG ATGTCATCAT GGGCCAGGGC GGCAATGACT CGCTTGACGG TGGCGACGGC
GACGACAGCA TCGACGGTGG CGAAGGCGAT GACGTCATGT TCGGTGGCAC CGGCTCGGAT
GTGCTTATTG GCGGGCTTGG TGGTGACACG ATCTCTGGCG GCGACGGCGA CGACCTCATC
GATGGTGGCG AGGGCGACGA TTTCCTTTCG ACCGGCCTTG GCAACGATAC GCTGCTCGGT
GGCGAGGGCA ATGATACACT CCACAACTCG GCTGGGGACG ACAGCCTTGT TGGCGGCGTC
GGCGACGACA GCATTGTAGC CACCGAAGGC AACGACACCC TTGAGGGGGG CGACGGCAAT
GATACGCTCT ACGCAGGGGT CGACAACGAC AGCCTCGATG GTGGCCTCGG AAATGACAGC
ATGTTTGGCG AAGCCGGCAG CGACATCATG TTCGGCGGCG GCGGCATGGA CTACATGGAG
GGCGGCATCG GAAATGACAC CATCGATGGT GGCGACGATG ACGACACGAT CCTTGGTGGT
GATGGCGACG ATCTGATCTA CGGCGGCGCG GGCAACGACA GCCTGACCAC CGGTGCGGGC
AATGACACGC TCTTTGGCGG CGAAGGCGAC GATACGCTGC GCAACTCGGT TGGTGATGAC
AGCCTGTCCG GTGGCACCGG CAACGACAGC ATTGTTGCGA CCGATGGCAA TGACACGCTT
GATGGCGGCA GCGGCAATGA CACCATGTAT GGAGGCAACG ACAACGACCT CCTGATCGGT
GGCACCGGTG CGGACCTCAT GTACGGCGAG GCAGATGCCG ATACCTTCCG GATCGAAGAT
AATTTTGGCA ACGACACCAT CGTCGGTGGC GAGGCCGGGA ACGATCAGGA CGTTGTCGAT
CTGTCTTATA TGACCGGCCC GGTCACGGTG ACCTACACCG GCCCCGAAGC CGGAACGATC
ACCGACGGCA CCGACACGAT CCAGTTTTCC GAGATCGAAG AGCTCATCCT CACCGATCAG
GACGACGTCG TTGATGCCCG AAACGATACC GCCGGTGTTC AGATTAATGC GGGATCAGGC
AACGACAGCC TCACTGGCGG CAGTGGGGAC GACGTGTTTA CCGGCGGCGC CGGGGATGAC
CTGATCTCGC TGACTGCCTC GGGCGGGGTC GACCAGATCA CCGACTTTGA CATCAATGAC
ACCGATGTTG ATGGCTTTTA CAACGACCAG CTGGATGTCT CTGGCCTGAC GGGTGGGTCC
GGCGATGGCG GGGCCGTACG CACCATCGAC GTCACCACAA GCGACGATGG CTTTGGCAAT
GCACTTCTGA CGTTCCCGGG TGGCGAACAG CTTGTTTTGC AGGGCGTCAC ACCGGCACAG
ATGACCACCC ACGATCAGCT GTTTGCCGCT GGTATCCCCT GCTACACGCC CGGCAGCCGC
GTGATCACCG CACGGGGCGA GGTCCCGGTG GAAGAGATCC GCGAAGGCGA TCTGGTCCAG
ACAGCTGACA ACGGGCTACA GCCGGTGATC TGGGTCGGCC ACCGCAGGCT CTCGGCTTCG
GATCTGGCGC GACATCCGCA TCTGCGACCT GTCCTGCTGC GCCCCGGCGG AATAATCGCA
AATGATCGCG CCATGCTGGT CTCGCCGCAG CATCGCTTCT TGCTGCCCTC CGATGGCGCG
TCCAGAAGCG AGTCCTTTGT GCGCGCCCGC CTTTTGCTTG AGCTCGACCC TGGTCATGTC
CATGCGGAGG AGCGCGCGTC GGGGGTGTGC TACATCCATT TGATGACCGA GGCGCATCAG
GTGATCTTTG TAGACGGCTG CGCGACAGAG ACCTTCTGGC CCGGCCCCGA GGCCCTGCGC
GGTCTCAGCC CTCGCGACAA ACGCGAGATT TTTGACCTGT TCCCCGAGCT CATTCCTGCG
CTTTCGAACC GGGGTGAGAT CGGGCGCAAG CTCGTGTCAT CGCGCTATGG CGCCTTAGCG
CGTCAGGATC TGCGGCGCAA AGATATTGCC CAGATGGAAC CTTTCCATCC GCGTCAATCG
CGCCGCGCCT GA
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| Protein sequence | MTRINRPAAD AEEFLLHSEV ENEHDWRALP ETFDVDDFAP WEEEWDLEEE EEEEEDPEHI
DNSQFFQTDG SGNEGLIDNL LKLTGRDNAA ANANGNANGL FKLVLGGDGD DSLTGSRDDD
VVMGGRGHDS VEGGEGNDTL MGDEDGQTGS DATPLVLNIN NLVSQSYYDG ASAGIGDTAV
YRDVAFLEDG TAVWGRLVLV NASDPNMTID LSGDRGAEIS ITGNGYGDTA EFRLEFFDPT
TGEPVNINST ATFNDLDQNY YNYDVEAVSL DTDEYTAFGT SDGTSLNVTN QDGSVRAAGT
EANNPDDQDA WFSAEFEGRD FITFTLEARS TISGFTLSGD LIEDGVYVPI EQGNDTLLGG
LGSDVIMGQG GNDSLDGGDG DDSIDGGEGD DVMFGGTGSD VLIGGLGGDT ISGGDGDDLI
DGGEGDDFLS TGLGNDTLLG GEGNDTLHNS AGDDSLVGGV GDDSIVATEG NDTLEGGDGN
DTLYAGVDND SLDGGLGNDS MFGEAGSDIM FGGGGMDYME GGIGNDTIDG GDDDDTILGG
DGDDLIYGGA GNDSLTTGAG NDTLFGGEGD DTLRNSVGDD SLSGGTGNDS IVATDGNDTL
DGGSGNDTMY GGNDNDLLIG GTGADLMYGE ADADTFRIED NFGNDTIVGG EAGNDQDVVD
LSYMTGPVTV TYTGPEAGTI TDGTDTIQFS EIEELILTDQ DDVVDARNDT AGVQINAGSG
NDSLTGGSGD DVFTGGAGDD LISLTASGGV DQITDFDIND TDVDGFYNDQ LDVSGLTGGS
GDGGAVRTID VTTSDDGFGN ALLTFPGGEQ LVLQGVTPAQ MTTHDQLFAA GIPCYTPGSR
VITARGEVPV EEIREGDLVQ TADNGLQPVI WVGHRRLSAS DLARHPHLRP VLLRPGGIIA
NDRAMLVSPQ HRFLLPSDGA SRSESFVRAR LLLELDPGHV HAEERASGVC YIHLMTEAHQ
VIFVDGCATE TFWPGPEALR GLSPRDKREI FDLFPELIPA LSNRGEIGRK LVSSRYGALA
RQDLRRKDIA QMEPFHPRQS RRA
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