| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3038 |
|---|
| Symbol | |
|---|
| ID | 4075743 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008043 |
|---|
| Strand | + |
|---|
| Start bp | 5407 |
|---|
| End bp | 6159 |
|---|
| Gene Length | 753 bp |
|---|
| Protein Length | 250 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 638004539 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_611274 |
|---|
| Protein GI | 99078016 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAAC AGATTGCGAT CACCGCGCTC ACCCTCGCCG CGACCTTTGG CACAGCGCAG
GCAGAGACGA TCAACGTCGG CATGTCCGGC GGTTATTTCC CCTTCACCTT CGTCAAACTG
GACGAATTGC AGGGCTTCGA AGTTGACGTC ATCAATGCCA TTGCCGCCGA AACGGGTGAT
GAGGTGAACT TTGTCACCAT GTCCTTTTCC GGTCTGATCG GCGCGCTCGA GTCGGGCCGC
ATCGACACCA TCGCCAACCA GATCACCATC ACACCCGAGC GCGAAGCAAA ATTCGCCTTC
TCGCAACCCT ACGTCTTTGA CGGCGCGCAG GTGGTGGTGA AGCGAGGCAA TGAAGACAGC
ATCACCGGAC CTTCTGATCT CAGCGGCAAA TCCGTTGCGG TCAACCTCGG CTCGAACTTT
GAGGAGCTGC TGAACGAACT GCCCAATGCG TCTGAGATTG ATATTCGCAC CTATGAGAGC
AACATCGCTC AGGATACCGC GCTGGGGCGC GTCGATGCGT TTGTGATGGA CCGGGTGTCC
TCGGCACAAC TCATCGCAGA AAGCCCCCTG CCCCTCGCCT TGGCTGGCGC GCCCTTCAGC
GAAATCCGCA ACGCCATGCC GTTCCGAACG AACGCCGAAG GCATCGCTCT GCGCGATAAA
TTTGATGCGG CGCTGACGAC GCTGAAAGAG GACGGAACCC TGTCGGAGAT CTCCCACAAG
TGGTTCGGCA CCGACATCAC CGTCGCGGAG TAA
|
|---|
| Protein sequence | MKKQIAITAL TLAATFGTAQ AETINVGMSG GYFPFTFVKL DELQGFEVDV INAIAAETGD
EVNFVTMSFS GLIGALESGR IDTIANQITI TPEREAKFAF SQPYVFDGAQ VVVKRGNEDS
ITGPSDLSGK SVAVNLGSNF EELLNELPNA SEIDIRTYES NIAQDTALGR VDAFVMDRVS
SAQLIAESPL PLALAGAPFS EIRNAMPFRT NAEGIALRDK FDAALTTLKE DGTLSEISHK
WFGTDITVAE
|
|---|
| |