Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_3872 |
Symbol | |
ID | 4074935 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008042 |
Strand | + |
Start bp | 127012 |
End bp | 127743 |
Gene Length | 732 bp |
Protein Length | 243 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 638004529 |
Product | GntR family transcriptional regulator |
Protein accession | YP_611264 |
Protein GI | 99078005 |
COG category | [K] Transcription |
COG ID | [COG2186] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 51 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.405491 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCCAAT ACCGGCGCTA TCAGGACGTG GCACAGGCCT TGCGGGGTGT GATCCGGGAA GAAGGGTTTG CCGTCGGCGA TCGCCTGCCC CCGGAACGGC AGCTCTCAGA ACGGCTTTCA GTGTCGCGAT CGTTGGTACG TGAGGCATTG ATCATGCTGG AAATTGATGG GCTGGTCGAG GTTCGCAAGG GCTCTGGCAT CTATCTGGCC ACACCCTCTG CAACAAAGGC CCCGCCGGAG CGTGACGATA TCGGCCCATT TGAATTGCTA CAGGCACGTC AGCTTCTAGA AAGCTCCATT GCCGCCTTTG CCGCCGAGAT GGTCACGAAG AACGACATCA CACGGATGCG CGAAGCGCTG GAAATGGAGC GCGCCGATAT TGAGGCCGGC AGCACGGATC ACTCCGGCGA CGAGCTTTTT CACCGGCTGA TTGCTGAGGC AACACAGAAT TCGGTACTGG TGGACATGGT CGATGAGTTA TGGCGCAAAC GGGACCAGAG CCCGATGTGG GCCAAATTGC ACGACCGTAT CTTTGATGCG GGGTATCGCC AGAACTGGCT TGACGACCAC CAACAGATTT TGACCGCTTT GCGCACCAAA GATCGTGACG GTGCGCGCGC TGCCATGTGG CAACACCTTG CCCATGTTCG AGAAACGTTG ATGGAACTGT CTGATGTCGA TGACCCAGCC TTTGATGGGT ACCTCTTTCA ATCTATTTCC GCGCCAACCT GA
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Protein sequence | MTQYRRYQDV AQALRGVIRE EGFAVGDRLP PERQLSERLS VSRSLVREAL IMLEIDGLVE VRKGSGIYLA TPSATKAPPE RDDIGPFELL QARQLLESSI AAFAAEMVTK NDITRMREAL EMERADIEAG STDHSGDELF HRLIAEATQN SVLVDMVDEL WRKRDQSPMW AKLHDRIFDA GYRQNWLDDH QQILTALRTK DRDGARAAMW QHLAHVRETL MELSDVDDPA FDGYLFQSIS APT
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