| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3871 |
|---|
| Symbol | |
|---|
| ID | 4074934 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008042 |
|---|
| Strand | + |
|---|
| Start bp | 125204 |
|---|
| End bp | 127015 |
|---|
| Gene Length | 1812 bp |
|---|
| Protein Length | 603 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 638004528 |
|---|
| Product | Beta-glucuronidase |
|---|
| Protein accession | YP_611263 |
|---|
| Protein GI | 99078004 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3250] Beta-galactosidase/beta-glucuronidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.311387 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCGAAC GTTCCGAACT CGCAGATAAC GCGCTGCAAG CTTTGCATGA CGAGGATTAC
GACCGTCCTT TCAATACGCA AAACCTCAAC GCCGATACGC TGATATTCAC CCGAGGCCGC
CAAGGGCAGT CTTTGGATGG GGATTGGAAC TTCTGCGTCG ACCTTCTGGA CACCGGACTG
CGGCAAAAAT GGTTCGCCAT GACGCCAGAA ACTCCAGCGG ATCGAGTCGA ACCTTGGGAT
TATGACCCCT ACATGGGCGA CACGGTGCCT GTGCCCTCCT GCTGGCAGAT GCAAAAAGAG
AAGTGGTACT TTTTTGAGGG CTCTGCCTGG TATACGCGTC CGTTGACGCA CACCCCGACA
CCGGAGCGGC GGCAGGTGCT ACGCATCGGT GCTGCGCAAT ATGATTGTAA AGTATTTTTA
AATGGCGCGT TTCTCGGTAA CCACTACGGG GGCTCAACAC CATTCTGCGT GGAATTGACC
GAGGCCCTGA AGCCGGGACA AAATTGGCTG ATGCTCTGCG TCAACAACAC CCGCACGCTG
GACCGTGTTC CGATGCGGAA CACCGATTGG TTCAACTATG GCGGCGTCTA CCGAGAGGTA
ACGCTGTATG ATCTCCCGTC CGTTGTGATC CGCGATCTGT TTGTTCGCCT TGAGGGGAAT
GCAATCCGCG TATCGGCTGA GGTCGATGGC GAGTGCGCGT CAGCTCAGCT TTTGATTCCC
GAGTTGGGTA TCGATGTGGA GTTGCCCTTG ATCGCAGGAA AAGGTGATTT GACTCTTCCC
GCCTCACCCG AATTGTGGTC GCCGGACAAC CCTAAGCTCT ATGACGTTTC TCTGACTGCA
GGTGAGGATC AGGTACGCGA CCGGGTCGGG TTTCGCAGCA TCTCTCGCGA GGGAACCGAA
ATCCTGTTGA ACGGAACACC CCTCTTCCTG AGAGGCATTT CCGTGCATGA AGACGATGCA
ACGCAAGGAA AGGTCACCAG CGAGACCGAC ATCCGCCGCC GGTTTGCTCA CGCCAAAGAA
CTGGGATGTA ACTTCCTGCG CCTTGCCCAT TACCCACATC ACGAAAGAGC ATCCGAAATT
GCTGATGAAA TGGGTTTGAT GCTCTGGGAG GAGGTTCCGG TCTATTGGGC GATCGACTTT
GCCAACCCCG CAACTCGGCG GGATGCTGAG AACCAGTTGC GCGAACTCAT TCGCCGCGAT
CGAAACCGCG CTAGCGTGAT CATCTGGTCG GTGGGCAACG AAAATCCTGA CACCGATGCA
CGGCTTGATT TCATGCGCGG ACTCGCAGAT CTGGCCAAGA CCGAGGACCC AACCCGCCTG
ACATCTGCCG CCTGTCTGGT GAACCATACA AAGCTAAAGA TTGAAGACCG GCTTGCCGAA
TATATCGATA TCATTGGCTT GAACGAATAT TATGGCTGGT ACGAAGAGAA CTTTGACGAA
CTAAATGAGA TTGGACGCAA TTCTGCGCCT GACCGCCCGG TGGTCATCTC TGAAACCGGC
GCGGACGGCG ACAGCACTGA ACAGGGGCCA GAACGCGGAC TGTTCAGTCT CGCCTATCAG
GATGAGGTCT ATGCCAAACA GATCGCTACA CTTCGCACGC TGGACTATGT GAAAGGCATG
TCGCCTTGGA TCCTCTATGA TTTTCGAGTG GAACGACGAC AGGGAATCTT TCAGCGCGGC
TGGAACCGCA AGGGACTGAT CGCAGGTGAT AAGGCGACCA AAAAACCTGC ATTCCATCGG
TTGGCCGCCT ATTATGCCGA ACGCGCGGCA GTTGAGCACC AACCACCATT CGCTCCCGAG
GAGACAGCAT GA
|
|---|
| Protein sequence | MLERSELADN ALQALHDEDY DRPFNTQNLN ADTLIFTRGR QGQSLDGDWN FCVDLLDTGL
RQKWFAMTPE TPADRVEPWD YDPYMGDTVP VPSCWQMQKE KWYFFEGSAW YTRPLTHTPT
PERRQVLRIG AAQYDCKVFL NGAFLGNHYG GSTPFCVELT EALKPGQNWL MLCVNNTRTL
DRVPMRNTDW FNYGGVYREV TLYDLPSVVI RDLFVRLEGN AIRVSAEVDG ECASAQLLIP
ELGIDVELPL IAGKGDLTLP ASPELWSPDN PKLYDVSLTA GEDQVRDRVG FRSISREGTE
ILLNGTPLFL RGISVHEDDA TQGKVTSETD IRRRFAHAKE LGCNFLRLAH YPHHERASEI
ADEMGLMLWE EVPVYWAIDF ANPATRRDAE NQLRELIRRD RNRASVIIWS VGNENPDTDA
RLDFMRGLAD LAKTEDPTRL TSAACLVNHT KLKIEDRLAE YIDIIGLNEY YGWYEENFDE
LNEIGRNSAP DRPVVISETG ADGDSTEQGP ERGLFSLAYQ DEVYAKQIAT LRTLDYVKGM
SPWILYDFRV ERRQGIFQRG WNRKGLIAGD KATKKPAFHR LAAYYAERAA VEHQPPFAPE
ETA
|
|---|
| |