| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3870 |
|---|
| Symbol | |
|---|
| ID | 4074933 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008042 |
|---|
| Strand | + |
|---|
| Start bp | 124211 |
|---|
| End bp | 125185 |
|---|
| Gene Length | 975 bp |
|---|
| Protein Length | 324 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 638004527 |
|---|
| Product | TRAP dicarboxylate transporter, DctP subunit |
|---|
| Protein accession | YP_611262 |
|---|
| Protein GI | 99078003 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 44 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.427037 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCAAGA CGTTTACCAC CGCACTGTCT GCGCTGGCAC TGACCGCGTC GGTTGGCGCG
ACAGGCGCAA CCACCTTGAA ACTTAACCAC AATAACCCGC CAGATCATCC GGTCCACATC
TCAATGCAGA TTATGGCAGA CCGTGTGGCA GAGCTGACCG ACGGCGAAAT CAAGATCCAA
ATCTTCCCCA ATGCCCAGCT CGGCACTCAA CGGGAATCGA TGGAACTGGT CCAAAACTGC
GCTTTGGAGA TGGCACGCTC CAATGCGTCC GAACTCGAAG CATTCGAGGA AAGCTATTCG
GCGCTCAATC TGCCTTACAT CTTCTCGTCC GAAGAGCATT TCAACACGGT GATCACCGGC
GACATCGGCC AGGATATCCT GAATTCTTCT GTCGATCAGG GTTTTCGCGG GGTCGCGTTC
TATACCGAGG GTGCGCGTTC CTTTTATGCG CAAAAGCCGA TCATGTCCCC GGCAGACTTG
CAGGGCGTAA AAGTGCGTGT TCAGCCAAGC CCCTCTGCCA TTCGCATGGT CGAACTTTTG
GGCGGCAACC CGACACCGAT TTCCTGGGGT GAGCTTTATA GCGCGCTGCA GCAGGGCGTT
GTGGATGCGG CAGAAAACAA CCCAACCGCA CTGACCACCG CACGCCATGG CGAAGTAGTC
AGCGATTTTT CCTTGGATGA GCACACTATG ATCCCCTCGG TTGTTGTGAT CTCCAACTGC
GCATGGGACG GTATGACTGC CGAACAGCAA AAGGCCCTGC AAACTGCTGC ACTCGACTCC
ATGGCCGCGC ACCGCAAGGC GTGGAACGCA GCCTCCGACG CGGCGATTGA GGAAGCGAAA
ACCACGCTGA ACGTCAATGT CCACATGGTC GACAAAGCGC CTTTCGCTGA GGCTGTCTTG
CCAATGCATG AGGAAGTGGC GGCGAAATCC GAGCACCTTG CCGATCTGAT CGATCGCATC
AAAGCAGCCC AATAA
|
|---|
| Protein sequence | MTKTFTTALS ALALTASVGA TGATTLKLNH NNPPDHPVHI SMQIMADRVA ELTDGEIKIQ
IFPNAQLGTQ RESMELVQNC ALEMARSNAS ELEAFEESYS ALNLPYIFSS EEHFNTVITG
DIGQDILNSS VDQGFRGVAF YTEGARSFYA QKPIMSPADL QGVKVRVQPS PSAIRMVELL
GGNPTPISWG ELYSALQQGV VDAAENNPTA LTTARHGEVV SDFSLDEHTM IPSVVVISNC
AWDGMTAEQQ KALQTAALDS MAAHRKAWNA ASDAAIEEAK TTLNVNVHMV DKAPFAEAVL
PMHEEVAAKS EHLADLIDRI KAAQ
|
|---|
| |