| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3869 |
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| Symbol | |
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| ID | 4074932 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008042 |
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| Strand | - |
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| Start bp | 123436 |
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| End bp | 123951 |
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| Gene Length | 516 bp |
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| Protein Length | 171 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 638004526 |
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| Product | tripartite ATP-independent periplasmic transporter DctQ |
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| Protein accession | YP_611261 |
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| Protein GI | 99078002 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3090] TRAP-type C4-dicarboxylate transport system, small permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 44 |
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| Plasmid unclonability p-value | 0.499764 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.600837 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGGGCGT GGGTCGACAT GCTCCTCAAA CTGGTCATTA CGACGATCTT TGTGGTGCTC
GTGGCCTGCG TGAGCTGGCA GGTCATCAGT CGTTACGTAT TAGGTACGCC TAGTACGGTA
ACCGATGAAT TGGCGCGGTT TCTCTTTATG TGGTTGGCTT TGGTTGGAGG GGCCTACACA
TTAGGTTTGC GCCGACACTT AGCAATTGAT CTTCTAACCC AGAAACTGTC GGGGCGGGCT
CGGATCATAA GCGAGATATT CGTCCTATTT GCCATTTTTG GCTTTGCAAC CTCTGTCATG
ATCCGGGGTG GTAGCCAGCT TGTCCTCAAG ACTATGGCTT CCGGTCAAGT TACGCCAGCG
CTTCAATTTC CTATGGGGTT GGTCTATGGC GCGATCCCCT TCGCGGGCGC GATCATCGTG
TTTTACTGCG TCATTTTTGC GTTCGAGCTG TGGCGTGACG GTCCATCTTC GCCCGAGCTT
GGCGAGACGG CGCCGCTCGG TGGTCCTCTT GATTAA
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| Protein sequence | MRAWVDMLLK LVITTIFVVL VACVSWQVIS RYVLGTPSTV TDELARFLFM WLALVGGAYT
LGLRRHLAID LLTQKLSGRA RIISEIFVLF AIFGFATSVM IRGGSQLVLK TMASGQVTPA
LQFPMGLVYG AIPFAGAIIV FYCVIFAFEL WRDGPSSPEL GETAPLGGPL D
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