| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3868 |
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| Symbol | |
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| ID | 4074931 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008042 |
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| Strand | - |
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| Start bp | 122123 |
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| End bp | 123424 |
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| Gene Length | 1302 bp |
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| Protein Length | 433 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 638004525 |
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| Product | TRAP dicarboxylate transporter- DctM subunit |
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| Protein accession | YP_611260 |
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| Protein GI | 99078001 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 38 |
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| Plasmid unclonability p-value | 0.759388 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.423135 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGACAG CTATTTTTCT TCTCTTTGGC AGTTTTGTCG TGCTGATGGC GCTGGGTGTG
CCGATTGCGT TTGCTATTGG TCTTGCGACC ACCGCGACGT TCTTGTTGTT TATGGGAGTG
GACCAATCCC TGTTTATCGT TGCGCAGCAA ATGGCGTCAG GGTTGGACAG CTTTACGCTT
CTCGCCATTC CATTTTTTAT CTTGGCGGGG AACATCATGA ACCGCGGTGG GATCGCCATG
CGGTTGATCA ACTTCGCCAA AGTGCTGGGC GGTCGGCTTC CTGGCGCGCT GGCCCATTGC
AACGTGATTG CCAACATGAT GTTCGGATCT ATTTCCGGAT CTGCTGTGGC CTCTGCTGCG
GCAGTGGGCG GCGTGATGGC TCCTTTGCAA AAGAAAGAGG GTTACGATCC TGCTTTTTCT
GCTGCGGTCA ATATTGCCTC CTGTCCGACA GGCCTGTTGA TACCGCCGTC AGCAACGTTG
ATCGTTTACT CCTTGATCAC TGGCGGAACA TCTATAGCCG CGTTGTTCGT AGCTGGATAT
TTGCCCGGCA TCCTGATGGG GCTGGGATTG ATGATCGTGG CTGGTGTGAT CGCTAAGCGG
CGCGGCTATC CTGTTGCGCC CCGTCCCGCA CTCAGCGAGG TCATGGTGGC CGCGCGCGAT
GCAGCCTTGC CTCTGGGCCT GATCGTGATC GTGATGGGCG GCATCATCTC GGGTGTCTTC
ACGGCAACCG AGGCCTCGGC CGCAGCAGTG CTCTACACGC TGGTTTTGGC ATTGGTCTGG
TACCGCGAAA TCACGATTAA GGATTTGCCC GCAATATTGA TAGAAAGCGC GGTCACTACT
TCAGTGGTTC TATTGATGAT CGGCGCGTCC ATCGCGATGA GCCGTGTCAT GGCCTTTGGC
GGCATCCCTT TTGCGATCTC AGATTTCTTG TTGGGTCTAT CTGATAACCC GATTGCTATC
CTCCTGGCGA TCAACGTGGC GCTGCTGGTC GTCGGGACCT TTATGGATAT GACACCTGCG
CTCTTAATCT TCACGCCAAT TTTCATGCCA GTTGTCAAAG GCCTTGGTAT GGACCCTGTG
CATTTTGGCA TCGTGATGAC GCTAAACCTC TGCATTGGTA TCTGTACGCC GCCTGTGGGT
TCAGCCCTGT TTGTGGGCTG CTCTGTCGGG GGCACTTCTA TTGCCAAAGT CATCCGCCCA
CTTCTGCCCT TTTATGCGGT GTTGTTCGGT CTCCTGATGC TGGTCACTTA TGTGCCTGAC
ATCAGCCTCT TCCTGCCGCG CCTTCTATTG GGATATCAGT AA
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| Protein sequence | MTTAIFLLFG SFVVLMALGV PIAFAIGLAT TATFLLFMGV DQSLFIVAQQ MASGLDSFTL
LAIPFFILAG NIMNRGGIAM RLINFAKVLG GRLPGALAHC NVIANMMFGS ISGSAVASAA
AVGGVMAPLQ KKEGYDPAFS AAVNIASCPT GLLIPPSATL IVYSLITGGT SIAALFVAGY
LPGILMGLGL MIVAGVIAKR RGYPVAPRPA LSEVMVAARD AALPLGLIVI VMGGIISGVF
TATEASAAAV LYTLVLALVW YREITIKDLP AILIESAVTT SVVLLMIGAS IAMSRVMAFG
GIPFAISDFL LGLSDNPIAI LLAINVALLV VGTFMDMTPA LLIFTPIFMP VVKGLGMDPV
HFGIVMTLNL CIGICTPPVG SALFVGCSVG GTSIAKVIRP LLPFYAVLFG LLMLVTYVPD
ISLFLPRLLL GYQ
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