Gene TM1040_3859 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_3859 
Symbol 
ID4074922 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008042 
Strand
Start bp111206 
End bp112078 
Gene Length873 bp 
Protein Length290 aa 
Translation table11 
GC content62% 
IMG OID638004516 
Productglucose-1-phosphate thymidylyltransferase 
Protein accessionYP_611251 
Protein GI99077992 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1209] dTDP-glucose pyrophosphorylase 
TIGRFAM ID[TIGR01207] glucose-1-phosphate thymidylyltransferase, short form 


Plasmid Coverage information

Num covering plasmid clones59 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACGCAGC GCAAAGGCAT TATTCTGGCC GGAGGCTCCG GCACCCGGCT TTATCCGATC 
ACCATGGCTG TCTCCAAGCA GCTCCTGCCG CTTTATGACA AGCCGATGAT CTACTATCCG
ATCTCGGTAC TGATGCTGGC GGGTATTCGC GAGATCTGCG TCATCACCAC GCCGCAAGAC
GCCGATCAGT TCCAGCGGCT CTTGGGCGAC GGCAGTCAAT GGGGCGTCAG ACTCACCTAT
GTGGAGCAAC CCAGCCCCGA TGGTCTGGCG CAGGCCTTCA TTTTGGCCGA AGAGTTCCTC
GCGGGGGCGC CCTCGGCGCT GGTGCTGGGC GACAACGTCT TTTTTGGCCA TGGGTTGCCG
GAGCTTCTGG CGGCGGCGGA TGCCAAGGAG GCAGGTGGCA CCGTCTTTGG CTATCATGTG
GCGGATCCCG AGCGCTATGG CGTGGTGGCC TTTGATGGCG ACGGGCGCGC CCATCAGATC
ATTGAAAAAC CCGAGGTGCC GCCGTCGAAC TACGCGGTGA CCGGGCTCTA TTTTCTGGAC
GGCTCTGCGC CTGCGCGCGC GCGCGAGGTC CAGCCCTCGG CGCGGGGCGA GCTGGAGATC
ACCGATCTTT TGCAGATGTA TCTCAATGAG GGCAGCCTCT CGGTCGAAAC CATGGGACGG
GGCTATGCCT GGCTTGATAC GGGTACGCAT GGCAGCCTTC TGGATGCGGG CAATTTTGTG
CGCACCCTCC ACGAGCGTCA GGGTCTGCAG ACCGGTTGCT TGGAGGAGAT TGCCTATCAC
GCGGACTGGA TCAGCCGCGA CGCGCTGGCA GAGCGGGCGG AGCTTTTCAA AAAGAACAGC
TATGGTCAGT ATCTGAAACG ACTGTTGGGC TGA
 
Protein sequence
MTQRKGIILA GGSGTRLYPI TMAVSKQLLP LYDKPMIYYP ISVLMLAGIR EICVITTPQD 
ADQFQRLLGD GSQWGVRLTY VEQPSPDGLA QAFILAEEFL AGAPSALVLG DNVFFGHGLP
ELLAAADAKE AGGTVFGYHV ADPERYGVVA FDGDGRAHQI IEKPEVPPSN YAVTGLYFLD
GSAPARAREV QPSARGELEI TDLLQMYLNE GSLSVETMGR GYAWLDTGTH GSLLDAGNFV
RTLHERQGLQ TGCLEEIAYH ADWISRDALA ERAELFKKNS YGQYLKRLLG