| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3848 |
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| Symbol | |
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| ID | 4074911 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008042 |
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| Strand | - |
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| Start bp | 100442 |
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| End bp | 102199 |
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| Gene Length | 1758 bp |
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| Protein Length | 585 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638004505 |
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| Product | ABC transporter related |
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| Protein accession | YP_611240 |
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| Protein GI | 99077981 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 0.135668 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.677159 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTGCGC GCAGTTGGGA CAGGTGGCGA TCAAGCTACA TCGGTCGCTT GGTCAGTGAA
AGTATGCGCT CTCAAGGATG GCGTTACGGT GTGGCTGCAT TGGCAATGAT CATCGTTGCA
GCCAGCTCTG CGGGTACTGC CTGGATGATG GAGAAAATCG TAGATGCGAT GACCACTCCT
GAGCTTCGTA GTAAAGTATA TTTGGTTGCT GGAGCCGTCA TAGGCCTCTT TTTTACTAAG
GCTTTAGCCT CTTATGTCCA AGCATTATTC CTTGCACGTG CTGGGAACCG CATCGTTGCG
AGCCAGCAGG AGAAATTGTA TCGACAGCTC TTGAGGAGAG GTGTTGGATT TTTTGGCACG
ACTGACTCAT CTGACTTGTT GATGCGTGTG ACCCACGGTG CTCAAGCCGC GAGAGAACTA
ATAGACGTGC TTATGACTGG CTTCGTAAGG GATACTCTTA CGTTGATTGG TTTGACGATA
GTAATGGTTT ATCAGCAACC TGTCCTATCA ATGCTCTTCA TCTTGATCGG ACCCATCGCT
CTATTGGGAG TCCGTCACCT TTTGAAGAGC GTACGGAATA TTATGAGAGC AGAGATGGCG
TCTCTGGCGG AGATTATCCG CGTCCTCCAA GAAACATCTG GCGGTATCAA AATTATTAAA
GTCTTCGCCC TGGAAGATCG TATGGTCGAG CGGATGGATA CAGCCATCGG ACAAGTGGAG
AAAAGAGCCA ACGACATTGC GAAGTTACAG TCTATTGCAA GTCCACTAAT GGAGCTTTTG
GCAGGTGTGG CTATCGCGAG TATATTGGTT GTGAGTACGA TGGGGATCGC CAATAGTGAA
CCGCCGACTG CTGGACAACT CATGTCCTTT ATCACAGCTC TTCTGATGGC ATATGAACCT
GCTAAGCGGC TATCTCGCAT GCGAGTGGGT ATTGAAACGT GTATGGTAAC CGTTTCTATG
ATGTTTGAAC TTTTAGATCA GGATGAGGCA ATCCAAGAGC GTGCTGGAGC GGTGAACCTT
GAGCCAGGTA ATGGATCTAT TCACTTCAAC AATGTTACGT TTGGGTATCA TAGCGACTTT
CCAATCATAA AAGACATGAA TCTTTCGTTT GAGCCGGGGA AGACTACGGC CCTTGTTGGG
CAGTCAGGGG GCGGTAAGTC TACGATATTT GGACTAATTA TGCGTTTTTA TGACCCGGAT
GCCGGAGCCG TCGAGATTGA CGGGCACAAT GTTAAAGACG TTAGTTTTGC TTCGCTGCGC
CGAAAGATAT CTTATGTTGG ACAAGACACT TTTTTATTCT CAACGACTAT CATGGAGAAC
CTGCGTTGCT CCGCACCAGA AGCGAGTGAC GAAGAAGTTA TTTCTGCGGC ACGCGCTGCA
CACGCACATG ACTTTATTTG TGAGTTTCCC GATGGCTATG AAACGCAAGT TGGAGAAAAT
GGTGTATTCT TGTCTGGAGG TCAAAAGCAG AGAATAGCAA TAGCACGTGC TATATTGAGA
AAGTCAGAGA TCCTATTGTT AGATGAGGCA ACGAGCGCAT TGGATGCAGA GTCCGAAGCA
CTCGTGAAAA CGTCTCTTAA AACGTTAACC AAAGACGTTA CAACTATTAT TATCGCACAT
CGCTTATCTA CTGTTTTGGA GGCAGACACC ATTATGGTGA TCAAGGATGG TAGAGTGATT
GAGAAGGGTG ATATGGACGA GTTGATGAAA AAAAATGGTA GCTTTCGCCA GCTGTTTGAG
CAGCAGTTTA AAAAGTAG
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| Protein sequence | MIARSWDRWR SSYIGRLVSE SMRSQGWRYG VAALAMIIVA ASSAGTAWMM EKIVDAMTTP
ELRSKVYLVA GAVIGLFFTK ALASYVQALF LARAGNRIVA SQQEKLYRQL LRRGVGFFGT
TDSSDLLMRV THGAQAAREL IDVLMTGFVR DTLTLIGLTI VMVYQQPVLS MLFILIGPIA
LLGVRHLLKS VRNIMRAEMA SLAEIIRVLQ ETSGGIKIIK VFALEDRMVE RMDTAIGQVE
KRANDIAKLQ SIASPLMELL AGVAIASILV VSTMGIANSE PPTAGQLMSF ITALLMAYEP
AKRLSRMRVG IETCMVTVSM MFELLDQDEA IQERAGAVNL EPGNGSIHFN NVTFGYHSDF
PIIKDMNLSF EPGKTTALVG QSGGGKSTIF GLIMRFYDPD AGAVEIDGHN VKDVSFASLR
RKISYVGQDT FLFSTTIMEN LRCSAPEASD EEVISAARAA HAHDFICEFP DGYETQVGEN
GVFLSGGQKQ RIAIARAILR KSEILLLDEA TSALDAESEA LVKTSLKTLT KDVTTIIIAH
RLSTVLEADT IMVIKDGRVI EKGDMDELMK KNGSFRQLFE QQFKK
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