| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3847 |
|---|
| Symbol | |
|---|
| ID | 4074910 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008042 |
|---|
| Strand | - |
|---|
| Start bp | 97529 |
|---|
| End bp | 100117 |
|---|
| Gene Length | 2589 bp |
|---|
| Protein Length | 862 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 638004504 |
|---|
| Product | peptidase S8/S53 subtilisin kexin sedolisin |
|---|
| Protein accession | YP_611239 |
|---|
| Protein GI | 99077980 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1404] Subtilisin-like serine proteases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.0267301 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.766221 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGTTC CCAACGATCC TCTTTTCTCG ACCCAGTGGC ATTTGCAAAA CACGGCCGTT
GGAGAATATG ATCTCAACGT CGTGGATGTG TGGGATGATT ACACAGGCGC TGGTGTGACG
ATCGCTGTTA TCGATGACGG AGTGGAAGCG ACGCATCCCG ACTTGATAGC AAATTACTCA
ACACTCAAAG ACTATGATCT GCTGAATTCA TCAGACACGA TCATATTGAC GCCTGAGTCC
TTTCCCGGTG CAGGGGATGG AAGTTTTCAT GGGACCGCAG TTGCGGGCAT TATTGCTTCT
GTTGGCAATA ATAATACAGG TGTTGTTGGT GTTTCCTACG GAAGCACGCT ATTTGGCATA
AAACTGGGGC AGGAGCTTGC TGCCCCCATC AAGCTCGTTT CTGGTCAGAT TATGATCGGT
GGGATTGACC GCTCTGCCGA CATTGTCAGC ATGAGTCTAG GAACTTTGAG TGCTGACAAT
TTTTTCGGCA GCCAAGACTC GTCTATCGAA ACCGCGCTTG CGATGGCCTT CGGCGCGCGA
ACCGGCCGGG ACGGCAAGGG TACTATTTTT GTGAAGTCGG CGGGCAACGA GCGGGACGCG
GACAATACTG GAACGCCAGT CACTACCGAG ACAAACGTCG CCGCTTGGAA TGCAACGATG
CATTCGATCG CGGTGGCAGC GGTCCAGCGT ACGGGAGTGA TTGATGATTA CTCGACCCCG
GGATCTTCTG TGCTTATCTC TGCATTTGGA TCGCCGGGTG AAATTGTCAC GACTGACGTA
ACCGGTACGG GGTATACGGC GGGGTCTGAC TACACTTCGG GTTTTAACGG CACGTCAGCT
TCAGCGCCGC AGGTGTCAGG TGTGATTGCA CTGATGCTTG AGGCCAATTC CAATCTTGGC
TGGCGGGATG TGCAGACCAT TCTGGCGTAT TCTGCCCGCC ACGTCGGTAC AGAAATTGGC
ACTAGCGTAA GCGGCTCTGA GAAATATGCG TATGCGTTCA ATGGGGCAGA CAACTGGAAT
GGCGGGGGCT TACATTTCTC TCGTGATTAC GGCTTTGGTT TGGTTGATGC AAAATCTGCA
GTCCGGATCG CTGAAACTTG GGGAACGGAC TTTGCGGGCA CTGGCAACCA GGAGGTCGCA
AGTATTGACC TGTTAGATAC GCAGATGACG TTGACTGGAG ATGGAACAGT TGACCGACTG
AGCGGAGCGG CAAGTACCAT TGTTGAGATC GAACATGTAC AGCTCAAAGT TGATTTTGCG
CAACTCTTTG ATTTGCAGGA TCTCGAGCTG CGCATAACGG GCCCGGATGG CACCCAGAGT
ATCGTTCTGG ACAATGTCAG CGCTGATAAC GATGAGAACG ACACGAACAC CTTAGAGCAG
TGGGATTACT TTTTCAGCAA CGCCTTCAGA GGAATGTCTA GCGAAGGCAC ATGGGCTGTG
GAGCTAATCG ACCTTGACAG TTCCGGGACC TCACCTGTGC AAGTTCAGAA TGTAGAGCTG
AACTTCTATG GCTCTGTGGC CAGCGATAAT GATACCTACA TTTTTACAGA TGAGTTTTCT
GACTATGCCG GTCGCTCGAG CCACAACACT GCGTTCGATG ACGCAGCTGG GTTGGATACG
ATCAACGCCG CTGCTGTAAG CGCTGCGAGT ACTCTGAACT TGAGCGAGGG TACGGGCAAT
ATCGATGGGG TTTCTATTAC ATTCTCAGGG ATCGAGAGTG TTTATACTGG GGACGGAAAT
GATAATCTAA CCGGGGATGC AGGTAACAAT GTTTTCCAGG CAGGCCGGGG GAACGACACC
ATCAATGGTG GTGATGGCAT TGATCAGGCT GTGGTCTTGG CCAACCAATT CAACTATTCG
GTCGCCATCA ATAAGAACGG TGCGGTCACC GTCACAGACC GCAACGCTTC CGAGGGTGAG
GATGGGCTGA CCGATATTGA AATGATCAAG TTTGCCGATG CTACCTTGGA CCTGACGCAA
TTTGTCAGCA CCGCCAGTCT TACGGTTGAT CAGTTTGAAC CCCTTGCAGA AATGTACGCG
GCCTATTTCA ATCGCGCTCC CGATGCCACT GGGCTGTATT TCTGGGCCGA CAAACTGGCT
GAGGGGCTTT CTCTCAATCA GATTGCCGAG CTTTTCTTTG ATCAGGCTGA GACGCGAGCG
CTCTATACGG ACCCGTCGAA TACCGATGCC TTTGTGACTT CGGTTTATGA TAATGTGCTA
GGCCGAACAC CAGACGCCTC AGGTTTCGAG TTCTGGAAAA GCCAGGTTTC GAACGGTAGT
GTTTCTCAAG GTGCTTTTGT GCTGGAAGTG ATCGGGGGAG CCAAGAATGG AGGCTCTGCT
GAGGATGTGC GATATCTATC TCAAAAGACA GACTTGGGCA TTTACTTCTC AGCTATCAAG
GGAATGTCTG ATGTCACAGA TTCGGCTTCA GTGTTCCAAA CCTTTGGAGA TGCGAGCACC
TCCAATCTTT CAGGCGCCCG TGCTGCGGTT GATCAGCACT ATGCGGATGC CACAACGGCT
AATGGGGGGG ATTTTCTTTT CAGTCTTATT GGCGTAATCG ATGATCCATT CTCTGCTACC
TTTGTATGA
|
|---|
| Protein sequence | MAVPNDPLFS TQWHLQNTAV GEYDLNVVDV WDDYTGAGVT IAVIDDGVEA THPDLIANYS
TLKDYDLLNS SDTIILTPES FPGAGDGSFH GTAVAGIIAS VGNNNTGVVG VSYGSTLFGI
KLGQELAAPI KLVSGQIMIG GIDRSADIVS MSLGTLSADN FFGSQDSSIE TALAMAFGAR
TGRDGKGTIF VKSAGNERDA DNTGTPVTTE TNVAAWNATM HSIAVAAVQR TGVIDDYSTP
GSSVLISAFG SPGEIVTTDV TGTGYTAGSD YTSGFNGTSA SAPQVSGVIA LMLEANSNLG
WRDVQTILAY SARHVGTEIG TSVSGSEKYA YAFNGADNWN GGGLHFSRDY GFGLVDAKSA
VRIAETWGTD FAGTGNQEVA SIDLLDTQMT LTGDGTVDRL SGAASTIVEI EHVQLKVDFA
QLFDLQDLEL RITGPDGTQS IVLDNVSADN DENDTNTLEQ WDYFFSNAFR GMSSEGTWAV
ELIDLDSSGT SPVQVQNVEL NFYGSVASDN DTYIFTDEFS DYAGRSSHNT AFDDAAGLDT
INAAAVSAAS TLNLSEGTGN IDGVSITFSG IESVYTGDGN DNLTGDAGNN VFQAGRGNDT
INGGDGIDQA VVLANQFNYS VAINKNGAVT VTDRNASEGE DGLTDIEMIK FADATLDLTQ
FVSTASLTVD QFEPLAEMYA AYFNRAPDAT GLYFWADKLA EGLSLNQIAE LFFDQAETRA
LYTDPSNTDA FVTSVYDNVL GRTPDASGFE FWKSQVSNGS VSQGAFVLEV IGGAKNGGSA
EDVRYLSQKT DLGIYFSAIK GMSDVTDSAS VFQTFGDAST SNLSGARAAV DQHYADATTA
NGGDFLFSLI GVIDDPFSAT FV
|
|---|
| |