Gene TM1040_3842 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_3842 
Symbol 
ID4074905 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008042 
Strand
Start bp90028 
End bp90330 
Gene Length303 bp 
Protein Length100 aa 
Translation table11 
GC content50% 
IMG OID638004499 
ProductXRE family transcriptional regulator 
Protein accessionYP_611234 
Protein GI99077975 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones54 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.039108 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTTCTAA AACAAGGCAT CCACACCTCT GATGCTGCGC GCGACGCCCG ATCAGATATG 
GGGCTTTGGT TGAAGTCGTT GCGAGAACAA CAAGGGATGT CCCAGAGGGA TCTGGCGAAT
GCGCTAAATC TCGATTATTA CACCTTCATC TCTCAATTGG AGAATGGACG CGGCCGCATC
CCACCAGCGA GATATCGTGA TTGGGCGGCG GCGTTGCAGG TGGAGCCTAA GAGCTTCGTG
AAGAAGCTTC TGTCTTATAA TGAGCCCCTT ACATACGAAA TTTTGTTTGG TGATGCTGTC
TAA
 
Protein sequence
MLLKQGIHTS DAARDARSDM GLWLKSLREQ QGMSQRDLAN ALNLDYYTFI SQLENGRGRI 
PPARYRDWAA ALQVEPKSFV KKLLSYNEPL TYEILFGDAV