| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3815 |
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| Symbol | |
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| ID | 4074966 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008042 |
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| Strand | - |
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| Start bp | 65427 |
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| End bp | 66080 |
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| Gene Length | 654 bp |
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| Protein Length | 217 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638004474 |
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| Product | VirB8 |
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| Protein accession | YP_611209 |
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| Protein GI | 99077950 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3736] Type IV secretory pathway, component VirB8 |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 44 |
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| Plasmid unclonability p-value | 0.626186 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.202746 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCGAGTG AACAAGAAAT CATCGAAGAA GAGCTGGTCT ATGGTGCGCT GCGCCGCGAA
CGGCTCTGGC AGCGCCTTGG GCTCATCGGG CTCATCTTCG GCATTCTCGG ATGCCTGAGC
GCGGCGACTG TCGCAATTCT CGATGTCGAT CCGCCGCCTG TGGTCGTGCC CTATGATCCC
GCAACCGGCT TTGCACTCCC CGAAGCCTCG GTGGGCGCCT CCTCGGTGAC CGCCAACCAG
GCGATCATCG AGGCGGAAGT CTTCCGCTAT GTGACCGACC GGGAGGTCTA CAACCAGCTA
GACAACGATC TGCGCATCCG CAGCGTCCTG CGCCGCTCGG ACGGAGCTGC CGAGAGCAGG
CTGCGCCAGA TCTGGAACAG CGCCAACGAG AATTATCCGC CGACGGTCTA TGGCCCCAAT
GCCAGGCTTG ATGTCGAAAT CCTCAGCATC AACCGGATCG GCACCAACCG CGCCACGGTC
CGACTGCGCA AGCGCCTGAC GTCAATCAAT GGCGTTCAGA CAGGCCTTTT CACCGCCACG
CTTCTCTTCG AGTTCCGCCC CGAGACCCGC CGCTCCATCG ATGAGGTCTG GACCAATCCC
TTCGGCTTCA CGGTCCTCGA ATATTCCATC CGCTCCGACA GATTGGAGAA TTGA
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| Protein sequence | MASEQEIIEE ELVYGALRRE RLWQRLGLIG LIFGILGCLS AATVAILDVD PPPVVVPYDP
ATGFALPEAS VGASSVTANQ AIIEAEVFRY VTDREVYNQL DNDLRIRSVL RRSDGAAESR
LRQIWNSANE NYPPTVYGPN ARLDVEILSI NRIGTNRATV RLRKRLTSIN GVQTGLFTAT
LLFEFRPETR RSIDEVWTNP FGFTVLEYSI RSDRLEN
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