Gene TM1040_3814 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_3814 
Symbol 
ID4074965 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008042 
Strand
Start bp64729 
End bp65424 
Gene Length696 bp 
Protein Length231 aa 
Translation table11 
GC content62% 
IMG OID638004473 
Productconjugal transfer protein TrbG/VirB9/CagX 
Protein accessionYP_611208 
Protein GI99077949 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3504] Type IV secretory pathway, VirB9 components 
TIGRFAM ID[TIGR02781] P-type conjugative transfer protein VirB9 


Plasmid Coverage information

Num covering plasmid clones50 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.204788 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGTTCCCAG TTCGACTTTT CTTCTTGCTG ATAGCCCTGT TGCCCGGCCT CGCCCTTGCC 
GAAGCCATCC CGCGCGGCGG TCCCAATGAC AATCGGGTGC GACTGGCCAC ATACCAGGAA
GGTCAGGTTT ATCGCCTCAA TGTCTCGCTG ACCCATGTGA CCACCATCGA GTTCGGGGAC
GGCGAGAGCA TCCGTTCGAT CATCGCAGGC GACACGGAAG GCTTCGAGAT TGACGGCGTG
CCGGGCGGGC AAGCCTTCGC GATCAAGCCC GTCGCGCGCG GTGTCCATAC CAACGTGACC
GTCTATACCA GCCGCCGCAG CTACTATTTC AACGTCCAGG AGGTCCGCAG TCCGACCTTT
TACGTGGTGC AATTCCGCTA TCCGGAGGAC GATACGCGCC CGACCCGGGC CATCGCCGCC
CAAGCGCCGA ACTACAATTA CGGCGCCAGC GCGCGGACCG AGTTCACCCC GACCCGGGTC
TGGGATGACG GGACCTTCAC GTATTTCGAA TTCCCTCGGA ACGCGCCCGT GCCCGCAATC
TTTCGTTACG CGAATGGCCG TGAACGGACG GTCAACACGC AAGCGACCGA GAATGGCGTG
ATCCGGGTTT CCGGGGTGAA CAGGCAATGG GTGTTGAGGA TCGGGGAAGA GGTGGTCTGT
ATCGAGGCCA CACCACCTGC GGGGGTAGGC TCATGA
 
Protein sequence
MFPVRLFFLL IALLPGLALA EAIPRGGPND NRVRLATYQE GQVYRLNVSL THVTTIEFGD 
GESIRSIIAG DTEGFEIDGV PGGQAFAIKP VARGVHTNVT VYTSRRSYYF NVQEVRSPTF
YVVQFRYPED DTRPTRAIAA QAPNYNYGAS ARTEFTPTRV WDDGTFTYFE FPRNAPVPAI
FRYANGRERT VNTQATENGV IRVSGVNRQW VLRIGEEVVC IEATPPAGVG S