Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_3814 |
Symbol | |
ID | 4074965 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008042 |
Strand | - |
Start bp | 64729 |
End bp | 65424 |
Gene Length | 696 bp |
Protein Length | 231 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 638004473 |
Product | conjugal transfer protein TrbG/VirB9/CagX |
Protein accession | YP_611208 |
Protein GI | 99077949 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3504] Type IV secretory pathway, VirB9 components |
TIGRFAM ID | [TIGR02781] P-type conjugative transfer protein VirB9 |
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Plasmid Coverage information |
Num covering plasmid clones | 50 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.204788 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGTTCCCAG TTCGACTTTT CTTCTTGCTG ATAGCCCTGT TGCCCGGCCT CGCCCTTGCC GAAGCCATCC CGCGCGGCGG TCCCAATGAC AATCGGGTGC GACTGGCCAC ATACCAGGAA GGTCAGGTTT ATCGCCTCAA TGTCTCGCTG ACCCATGTGA CCACCATCGA GTTCGGGGAC GGCGAGAGCA TCCGTTCGAT CATCGCAGGC GACACGGAAG GCTTCGAGAT TGACGGCGTG CCGGGCGGGC AAGCCTTCGC GATCAAGCCC GTCGCGCGCG GTGTCCATAC CAACGTGACC GTCTATACCA GCCGCCGCAG CTACTATTTC AACGTCCAGG AGGTCCGCAG TCCGACCTTT TACGTGGTGC AATTCCGCTA TCCGGAGGAC GATACGCGCC CGACCCGGGC CATCGCCGCC CAAGCGCCGA ACTACAATTA CGGCGCCAGC GCGCGGACCG AGTTCACCCC GACCCGGGTC TGGGATGACG GGACCTTCAC GTATTTCGAA TTCCCTCGGA ACGCGCCCGT GCCCGCAATC TTTCGTTACG CGAATGGCCG TGAACGGACG GTCAACACGC AAGCGACCGA GAATGGCGTG ATCCGGGTTT CCGGGGTGAA CAGGCAATGG GTGTTGAGGA TCGGGGAAGA GGTGGTCTGT ATCGAGGCCA CACCACCTGC GGGGGTAGGC TCATGA
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Protein sequence | MFPVRLFFLL IALLPGLALA EAIPRGGPND NRVRLATYQE GQVYRLNVSL THVTTIEFGD GESIRSIIAG DTEGFEIDGV PGGQAFAIKP VARGVHTNVT VYTSRRSYYF NVQEVRSPTF YVVQFRYPED DTRPTRAIAA QAPNYNYGAS ARTEFTPTRV WDDGTFTYFE FPRNAPVPAI FRYANGRERT VNTQATENGV IRVSGVNRQW VLRIGEEVVC IEATPPAGVG S
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