| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3809 |
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| Symbol | |
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| ID | 4074960 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008042 |
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| Strand | - |
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| Start bp | 60669 |
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| End bp | 61748 |
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| Gene Length | 1080 bp |
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| Protein Length | 359 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638004468 |
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| Product | TrbL/VirB6 plasmid conjugal transfer protein |
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| Protein accession | YP_611203 |
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| Protein GI | 99077944 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3704] Type IV secretory pathway, VirB6 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 56 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.83662 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGTCG TCACTTATTT CGTTGAAACC TCCCAGGGCT ATCTCGACAC CGCAGCAGAA
ACCCAGTTCG GGTCGGTCGC GGCAACGGTC GGCACGCTTC TCGTCCTGGG AACAACGCTC
GTGGTGATTC TCGTCTTCGT GAACATGATC TACCAATACA AGGCGATGGA CGGCCGCACG
GCCTTCTGGC TCGCGGTCAA GATCGGGTTG ATCGGGATAT TTGCAACCAA CTGGGTGCAG
TTCAACGCGC TCTCCTCCGC CATCCTAGCT GGCATCGACA GCATTGCGGG GGCGCTCGTG
GCTTCGGTCG GCGGTGGAAC TCCTGGCCCT TCTGGAACTT TCTCCGAAGA ATTCGACCGT
TTGATCGCCG AGTTGGGGGA CTACTTGAAC GCCGCAGGTT CAGAATTGAA CTGGATGGCC
GGCGCCATGC TCGACATTGT CGGGGTCCTC TTGCTCTCGA TCCTCGGCGG GCTGGCCGCC
TTCATCCTTG TGGCGTCCCG CCTGATGATC ACACTTCTAA TCGGGATCGC GCCGGTGATG
ATCTTCCTCA CCCTCTTCGA GGTGACCAAA GATTACTTCG CACGCTGGCT GTCGGCACTG
GTTTCCTTTG CACTCTACCC AATCGTCGTC GCAGGGGTAT TCGCAACGAT CACTGGCGTC
TCTTCCGCTC TGATCGGTGA GCTTGGCGAC CCGGAAGGGG CTCCAAACAT AGGCGCGCTC
ATCCCCTTCT TCATGATGGT CCTCATGGCC AAGGGCTTCA TCATTGCCAC GCCCTTCATC
GTCCGCGCGA TCTCCGGAAA CATCATGATG CCCGCCCTCT CCGGTGGTCT CAGCGGCGGC
TACAGCTTTG CCCGCGCCGC AATGGGCAGC CAGCAGGCCT ACAATCGCTA CCTGACCGGT
GGGGCAAGCG GTGCGGAATA TGCAGCCCTC AGAGCGCGGC AGTTCTTCGG TATGCAAGCG
TTGCCAAGCA GATCGAACTC AGCAGGCAGA CCAACAGATG TGCCAGCAAG CAGTGTGACT
GGAACCGGTA CCCGTATGCT GGCACAGCTT TCAAGGTTGG GGCGTCTCGG TAAACGGTAA
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| Protein sequence | MSVVTYFVET SQGYLDTAAE TQFGSVAATV GTLLVLGTTL VVILVFVNMI YQYKAMDGRT
AFWLAVKIGL IGIFATNWVQ FNALSSAILA GIDSIAGALV ASVGGGTPGP SGTFSEEFDR
LIAELGDYLN AAGSELNWMA GAMLDIVGVL LLSILGGLAA FILVASRLMI TLLIGIAPVM
IFLTLFEVTK DYFARWLSAL VSFALYPIVV AGVFATITGV SSALIGELGD PEGAPNIGAL
IPFFMMVLMA KGFIIATPFI VRAISGNIMM PALSGGLSGG YSFARAAMGS QQAYNRYLTG
GASGAEYAAL RARQFFGMQA LPSRSNSAGR PTDVPASSVT GTGTRMLAQL SRLGRLGKR
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