| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3785 |
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| Symbol | |
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| ID | 4074880 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008042 |
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| Strand | + |
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| Start bp | 33104 |
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| End bp | 35482 |
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| Gene Length | 2379 bp |
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| Protein Length | 792 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 638004445 |
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| Product | hemolysin-type calcium-binding region |
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| Protein accession | YP_611180 |
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| Protein GI | 99077921 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.0346171 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAGATA ACGACAGTGG CACTCCAGCT ACCGAAAGCA ATCAGACACT CACAGGAACC
GGAGCGGACG ACCAGCTATC TGGCGGGCTT GGTGATGATG TCATCACGGG TGGCGCGGGT
GACGATGTTC TGCGTGGTGA CGGTCCAATT GCAGGTTCTT GGCACTATGA AACCTTTGAT
CGCAATTTTA CCTCTGCGAA TGGGCAAGCT TTTGACTTTG GAGGTGATGC AAGCGAGCGC
ACAGGGTCCG GTTATGTCAC TGACTTTGAT GAATCCAGCC TAACAAACGC TATTCGCGGA
ACGACAGGAA ACCCAGGCGA TTTCGGTGTT ATCTACACCA GCACGCTGAA TATTACCGAT
AGTGGCGTCT ATACGTTCGC GACCAATTCT GACGACGGTT CGACAATCCA GATATTCGAC
AGCGCAGGTA CTCCCGTCAC GTTCACGCAG GGTGGGACAA CTGCGGACTA CATGAACAAC
GACTTTCACC AGCCAGCTAC GACAAGATCT GGTCAAGTCA CGCTCGACAG TAATGAAACT
TATACGATCC AGGTTCGGTA TTGGGAAAAT CAGGGTGCAG ACGTTCTTCA GGTTACAGTC
GATCCGCCTG GGTCGACGGG GGCGGTCAAT ATAAATGACA GTGGCCTGGT GGGGGTGCCC
CCGGACCCTG ATTATTCGAC AACGGGCGTA CCAGCTGGCG TTGAGGGAGA CGACTTTCTC
AGCGGAGGTG CGGGAAATGA CACCCTTTGG GGCGATGGAG GCGACGACAC GCTCAACGGT
GGTGCGGGTG ACGACATCAT TGATGGCGGC AGGGGGGCAG ACACGATCGA TGGTGGATTT
GGGCTCGATA CCATCGACGG GGGCGAGGAA GACGACATCA TTGCAGGTGG TGAAGGCAAT
GATGTGATCA CTGGTGGTGT TGGTGATGAC ATCATATTTG GAGACGAGTT CGACCCCGGT
GCGGGGAATG AATATTTTTA TGTGGGCAAT GCCTACATTG CCGACGAAAA CTATACCATC
ACCGGGTCAG GCGATTTTGC GGGCCCCACA GCGAGTGAAA TTCAAGTCAC AACTGATCCC
GTCACAATAC GGTTTCTGGA TGATGACACA TCCTTGGGTG GTGATGACGG GGCAAATGAA
GTCAGGGCAG ACCCGACATT TCAGAGGGTT GAGATTGATG GGGTCGAATA TGGGGCGAAT
CTGGATTTCA GCGTTACGTT TGAAGATCCC ACGGGCACTG TCTACCGGTT TGCAGTGCTC
GATGTCGACT TTGATGGGGA CGGCTCCAAC CAAGATGCCA ATGAAGACGG CCATATCCTC
ATACAGATCG ATGGCCCGGC CATCGTGCCC GGAACTGTTC TTGATACTCG TAGTGGGTTT
CAGAACATTT CCGCAACCGA CTACGACGCT CTGAGAGCAG CGACTGCATT TAACGACACC
ATTGATGGCG GAGATGGTAA TGACACAATC GAAGGTGGGC GTGGCAATGA TGCCATCACA
GTAGGTCGTG GTGATATAGC TACCGGTGGT GCGGACGCTG ATACTTTTAC GTTGGATTTT
GGTCAAACCA GCACTGACGG ATCAATGGTC GTTACCATTG ACGGCTCAAC TACCGAGATC
GACGGAGTTG ACAATGATAG CTTGGACCTG ACTGGTTTTG GTACGTTCAC TCTCACACAG
ACCACCGACA CAGACGGTAA TTCAACAAGC GGTACAGCAG TTTATGCAGA TGGAACGACT
GTCAACTTCA CCGAAATTGA AAATCTGATT GTGTGTTTCG CAAAAGGAAC ACAGATCAAG
ACAAGTGATG GTATTCGCGA CATTGAGAGC CTGCAAGTTG GCGACAAGCT CGTAACCAAA
GACAATGGCC TGCAGTCTAT TCGGTGGATC GGCAAGCGGA CGCTGAGTGA AGACAAACTA
GACGCCCACC CAAAGCTCAA ACCCATCCGC ATCAAAGCGG GCGCATTGGG CGAAGGGATG
CCTTCACGTG ATCTGATTGT TTCTCCACAA CACAGGATCG TTGTTCGGTC CAAGATCGCA
ATCCGAATGT TTGACACGCA AGAAATACTT GTGCCTGCAA AGCACCTGAT TGGCCTACAG
GATGTGTCGA TTGCTGCCGA AATGCGCGAA GTGACTTATT ATCATTTGTT GTGCGACAAT
CATGAGATCA TCGAGGCAGA TGGCGCATTC GCTGAGACAT TATACACGGG TACAGAGGCG
ATGAAAGCGA TGTCGCCAGA GGCACTAGAA GAGATTATGC TGATCTTGGG AGATCAGTTC
TCGACGCGCC GACCATTGGC CAGGTTCACG CCAAAGGGTC GGCAGGCCAA GAAATTGATA
GAACGTCATA TCAAGAATGA TCGAGCGGTG TATTGTTAA
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| Protein sequence | MADNDSGTPA TESNQTLTGT GADDQLSGGL GDDVITGGAG DDVLRGDGPI AGSWHYETFD
RNFTSANGQA FDFGGDASER TGSGYVTDFD ESSLTNAIRG TTGNPGDFGV IYTSTLNITD
SGVYTFATNS DDGSTIQIFD SAGTPVTFTQ GGTTADYMNN DFHQPATTRS GQVTLDSNET
YTIQVRYWEN QGADVLQVTV DPPGSTGAVN INDSGLVGVP PDPDYSTTGV PAGVEGDDFL
SGGAGNDTLW GDGGDDTLNG GAGDDIIDGG RGADTIDGGF GLDTIDGGEE DDIIAGGEGN
DVITGGVGDD IIFGDEFDPG AGNEYFYVGN AYIADENYTI TGSGDFAGPT ASEIQVTTDP
VTIRFLDDDT SLGGDDGANE VRADPTFQRV EIDGVEYGAN LDFSVTFEDP TGTVYRFAVL
DVDFDGDGSN QDANEDGHIL IQIDGPAIVP GTVLDTRSGF QNISATDYDA LRAATAFNDT
IDGGDGNDTI EGGRGNDAIT VGRGDIATGG ADADTFTLDF GQTSTDGSMV VTIDGSTTEI
DGVDNDSLDL TGFGTFTLTQ TTDTDGNSTS GTAVYADGTT VNFTEIENLI VCFAKGTQIK
TSDGIRDIES LQVGDKLVTK DNGLQSIRWI GKRTLSEDKL DAHPKLKPIR IKAGALGEGM
PSRDLIVSPQ HRIVVRSKIA IRMFDTQEIL VPAKHLIGLQ DVSIAAEMRE VTYYHLLCDN
HEIIEADGAF AETLYTGTEA MKAMSPEALE EIMLILGDQF STRRPLARFT PKGRQAKKLI
ERHIKNDRAV YC
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