| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3784 |
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| Symbol | |
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| ID | 4074879 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008042 |
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| Strand | - |
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| Start bp | 31929 |
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| End bp | 32483 |
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| Gene Length | 555 bp |
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| Protein Length | 184 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 638004444 |
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| Product | RNA polymerase sigma factor |
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| Protein accession | YP_611179 |
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| Protein GI | 99077920 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 38 |
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| Plasmid unclonability p-value | 0.119115 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCAGACCC TTTTGACCGA TACCAATGAT ATCGAAAACG CGATCATGCG TGTGGGCCTT
GGGGATCGGG CGGCGTTTTC TTTCCTGTAT GATGCGACCT CTGCGAAACT TTTTGGCGTC
TGCCTCCGTG TCTTGGGAGA TAGGGCTGAA GCTGAGGACA CGCTGCAAGA TGTTTTTGTG
AAGGTCTGGC ACAAAGCAGA CCGGTATAAA GCCAATGGCT ACAGTCCGAT GACTTGGCTG
ATCACCTTGA CGCGGAACAC GGCCATTGAC CGTCTGCGGG CTCGAAAAGC GGGCAACGTG
GACATCGACG ATGCGCACGA TCTGTCGGAC GGGTCACCGA CACCCGAGGC GGAGGCGATA
GCCTCGTCGG AACGACAAAG GCTGAATGCC TGCTTTGAAG AACTTCAAGC AGATAGATCA
GAAGCGGTGC GCCGGGCCTA TCTGGACGGC GACAGCTATA AAGACCTCGC GGCACGATAC
GATGTTCCGC TGAACACAAT GCGAACCTGG CTGCACCGCA GCCTGCTGAC ACTAAAGGAC
TGCCTGAGCC GATGA
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| Protein sequence | MQTLLTDTND IENAIMRVGL GDRAAFSFLY DATSAKLFGV CLRVLGDRAE AEDTLQDVFV
KVWHKADRYK ANGYSPMTWL ITLTRNTAID RLRARKAGNV DIDDAHDLSD GSPTPEAEAI
ASSERQRLNA CFEELQADRS EAVRRAYLDG DSYKDLAARY DVPLNTMRTW LHRSLLTLKD
CLSR
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