| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dgeo_1840 |
|---|
| Symbol | |
|---|
| ID | 4057570 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Deinococcus geothermalis DSM 11300 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008025 |
|---|
| Strand | - |
|---|
| Start bp | 1951169 |
|---|
| End bp | 1952164 |
|---|
| Gene Length | 996 bp |
|---|
| Protein Length | 331 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641230868 |
|---|
| Product | DNA-directed RNA polymerase subunit alpha |
|---|
| Protein accession | YP_605304 |
|---|
| Protein GI | 94985940 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit |
|---|
| TIGRFAM ID | [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.171686 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.370097 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGATCAAA AGCGCCCTCA ACTCAAGGCC CGCGTGGAGG GAGATTACGG CGAGTTCGTC
CTCGAACCGC TCACGCGCGG CTACGGCGTC ACCATCGGGA ATCCCATCCG GCGCATCCTG
ATGTCCTCGA TTCCCGGTAC TGCCGTGACG AGCGTCTACA TCGAGGATGT CCTGCACGAG
TTTTCCACTA TCCCCGGCGT CAAGGAAGAC GTCATCCGCA TCATCCTGAA TCTCAAGGAA
CTTGTGGTGA AATTCCACGC GCCTGGCCCG AAGACCCTGA CACTGCGGGC GCAGGGTGAG
GGTGTGGTCA AGGCCAGTGC CTTTGAGGTT CCAAGTGATG CCGAGATCGT CAACCCCGAC
CTGACGATCG CCACCCTCGC GGAGGATGGC AAGCTGGTCA TGGAGGTGCG CGTCGAGGAG
GGCGAGGGCT ATGTCCCGGC CGACAAGCAC GCCACCAAGG ACCGCATCAA CTCGATCCCG
GTGGACGCTG TGTTTTCTCC GGTTCGGCGC GTGGCTTATC ACGTTGAGAA CACTCGTGTG
GGCCAGCAGA CCGACCTGGA CCGCTTGATT CTGCGGATCT GGACAGATGG CAGTGTCGGC
CCCCAGGAGG CGCTGGACCG GGCGGTGGAG ATTCTGCGTG ATGAGCTGAC CGTGTTCGGC
AATGTCGAGA CGGTGTCGGC TGCTGCACCC GAATTGCCGT CGGTCTATAC GCCTGCTGCT
CCCATCGTGA GTGGCTACGA CCTGCCGCGC CAGCCCGAAC TCAGCATCAA CCCCCAGCCG
TACCCCGCTG ACCTCGACAC GCCCCGCGTG ACGCTGGAAG GCTTGGGCCT CACCACCCGA
GTGCTGCACT CGCTCAAGGA AGAAGGCATC GACTCGGTGG ACGCCCTGTG CGCCCTCTCC
GACCGTGACC TGAAGAAGGT GCCTGGCATC GGTGAGCGCA GCCTGGATGA GATCAAGCAG
CAGTTGGCCC AGTTCGGCCT GGCGCTGCGG GACTGA
|
|---|
| Protein sequence | MDQKRPQLKA RVEGDYGEFV LEPLTRGYGV TIGNPIRRIL MSSIPGTAVT SVYIEDVLHE
FSTIPGVKED VIRIILNLKE LVVKFHAPGP KTLTLRAQGE GVVKASAFEV PSDAEIVNPD
LTIATLAEDG KLVMEVRVEE GEGYVPADKH ATKDRINSIP VDAVFSPVRR VAYHVENTRV
GQQTDLDRLI LRIWTDGSVG PQEALDRAVE ILRDELTVFG NVETVSAAAP ELPSVYTPAA
PIVSGYDLPR QPELSINPQP YPADLDTPRV TLEGLGLTTR VLHSLKEEGI DSVDALCALS
DRDLKKVPGI GERSLDEIKQ QLAQFGLALR D
|
|---|
| |