| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dgeo_1207 |
|---|
| Symbol | |
|---|
| ID | 4057717 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Deinococcus geothermalis DSM 11300 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008025 |
|---|
| Strand | + |
|---|
| Start bp | 1285287 |
|---|
| End bp | 1286912 |
|---|
| Gene Length | 1626 bp |
|---|
| Protein Length | 541 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641230222 |
|---|
| Product | inner-membrane translocator |
|---|
| Protein accession | YP_604673 |
|---|
| Protein GI | 94985309 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4177] ABC-type branched-chain amino acid transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0120652 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.236247 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGCGC TCAATCCCGC CGCAGCGCGC CGCACTGTTC CGGCGCCGGA CCGGACCTGG
ATGCTGTTGC TGATCTTCCT GGTCACCAGT GCCCTGCTGC TGGTGTCACA TAACAACGCG
CTGCTGAGCA ATCTGGGGGG CCTGGGCACA GTGCTGCGCA ACCCCATCGT AGAAGCGGTT
GTTGTGTCAT TGTTCCTCGC CAACGTGTTG TTTGCCTATC TGTGGCGCGC TGCGCCGTGG
GCCAAGGCGC TGGTCGGCCT GGGGAGCCTG CTGCTGGTGC TGCCCTGGGC CGGGCAAGAG
GACACTTCGC TCCTTGACCT GAGTATTCAG ATCATGATCT TTGCCGCGCT TGCCCTGGGG
CTCAACATCG TGGTGGGGCT GGCGGGGCTG CTCGACCTGG GGTATGTGGC TTTCTTCGCG
GTGGGTGCCT ACATCTGGGG CATCTTTGCC AGCCCGCGCT TTTCCGAGGT GCTGCGCTAC
TACGGCCAGA ATCCCGGTGC AACCAACGCG GGGACCTTGG CCTTTGGCCT GTTCCTGACC
GCGATCACGG CAGCCAGCCT GGTCTACATC CGTCGCCGCA TCAAGCGGCC TACCCGCCTG
TCCACTTGGA GCTTCGCGCT GGCCAGCCTG GGATTGGTGG CGGGCCTGAT CCTGACTGCG
CGGGCGCTGC TGGTGCTCAA CGCTTTCCGT GCTCAGGGGC TAGCAACCGG CATCGATGCG
GGCTTCTTCT GGCTGTTCCT CGCGCTGAGC GTGCTGGCAG CGGCGATTGT CGGCGTGCTG
ATCGGCCTGC CGGTGCTGCG GCTGAAAGGC GACTACCTGG CGATCATCAC ACTGGGCCTG
GGTGAGGTGA TTCGCGTGCT CGCAAACAAC CTGGACCTGT ACTCGGCGGG TTCGCAGGGC
ATTACGCCCA TCAAGAGCGC GCCGGTGCCG TGGTTTGACC GGTTGGCGGG CACGCTGGGC
TTCCAGCCCG ACCAGTATTC CCTGCTGTTC TTGTACATGC TGGTGCTGGT GATGATCGCA
TTGATCCTGA CCGTGAATAT CCGGCTGGAC CGCTCGCGCA TCGGACGGGC CTGGATCGCC
ATCCGTGACG ACGAGGTGGC GGCACAGGCA ATGGGCGTAC CGCTGGTACA GACCAAACTG
ATCGCCTTTG CGACCGGCGC AAGCTTCGCG GGCGCGATGG GTATGATCTT CGCGGCCAAG
CAGACGTTCA TCAGCCCGGA GAGCTTCAAT CTGTTCCAAA GTATTGGCGT GCTGAGCATG
GTGATCCTGG GCGGCATGGG TTCCTTCCCC GGCGTCATTC TGGGTGCAGC GGTGGTGACG
CTGCTGAACC TGCGCATTCT GCCCGGCCTG GGCGAGGCGA CCGCCAACCT GGGCATTCCG
CAGCAGGTGA ATCCGGGACA GCTTCAGCGT CTGATCTTCG GTGTGATTCT GGTCACCATG
ATGCTGCTGC GTCCGGAAGG CCTCCTGCCC AACCGCCGCC GCACGCTAGA ACTGCATCAG
GAGGAGGATC AGGAAGACGA CAGCGCCAAG GGGTCGGGTC CCGCGCTGAC GGCTGGAGGC
GGGGACGTGT ACAGCCCCGG TCTTGCGCCC GAAAAGCAGG ACGAACCCGC GGGAGGTGTG
CAGTGA
|
|---|
| Protein sequence | MTALNPAAAR RTVPAPDRTW MLLLIFLVTS ALLLVSHNNA LLSNLGGLGT VLRNPIVEAV
VVSLFLANVL FAYLWRAAPW AKALVGLGSL LLVLPWAGQE DTSLLDLSIQ IMIFAALALG
LNIVVGLAGL LDLGYVAFFA VGAYIWGIFA SPRFSEVLRY YGQNPGATNA GTLAFGLFLT
AITAASLVYI RRRIKRPTRL STWSFALASL GLVAGLILTA RALLVLNAFR AQGLATGIDA
GFFWLFLALS VLAAAIVGVL IGLPVLRLKG DYLAIITLGL GEVIRVLANN LDLYSAGSQG
ITPIKSAPVP WFDRLAGTLG FQPDQYSLLF LYMLVLVMIA LILTVNIRLD RSRIGRAWIA
IRDDEVAAQA MGVPLVQTKL IAFATGASFA GAMGMIFAAK QTFISPESFN LFQSIGVLSM
VILGGMGSFP GVILGAAVVT LLNLRILPGL GEATANLGIP QQVNPGQLQR LIFGVILVTM
MLLRPEGLLP NRRRTLELHQ EEDQEDDSAK GSGPALTAGG GDVYSPGLAP EKQDEPAGGV
Q
|
|---|
| |